PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG489500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 397aa MW: 40819.1 Da PI: 7.566

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG489500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.5	3.7e-06	284	324	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L Pavir.5KG489500.1.p 284 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 324 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.97E-10	266	329	No hit	No description
PROSITE profile	PS50888	14.449	275	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-12	281	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-13	281	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.6E-10	284	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MDATFGWAGA GHHVDDYFSR QQVGCGRFEM DEAFLGACFG QLQCDGVLAA AGGGDTGACQ 60 VSSNCGAFEG AAGMDSDPLA FLGAGTGDAF DAGLLDAALA FTRELGDGGA VSNGAMLSSY 120 SGTTGGNISS GESNNYSSGG HDTEVVSPTS IMSPTTTAPR PFTHASSHQQ ALHAKRKVAD 180 EYPATGNATT APAPAALPRP GVAKRRAATN ISFGQGAQHS ARDPSGGGGY EPDMEAMAQV 240 KEMIYRAAAM RPVNLGPEVA AAASAEKPRR KNVRISSDPQ TVAARLRRER VSERLRVLQK 300 LVPGGSKMDT ASMLDEAASY LKFLKSQVQA LETLGTSSKS TSTSGVPSRS QHYNYFGSSS 360 SSNPGFLGLP RRSSNISPAG YVNPNGSTTN TGSKLL*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MDATFGWAGA GHHVDDYFSR QQVGCGRFEM DEAFLGACFG QLQCDGVLAA AGGGDTGACQ  60
VSSNCGAFEG AAGMDSDPLA FLGAGTGDAF DAGLLDAALA FTRELGDGGA VSNGAMLSSY  120
SGTTGGNISS GESNNYSSGG HDTEVVSPTS IMSPTTTAPR PFTHASSHQQ ALHAKRKVAD  180
EYPATGNATT APAPAALPRP GVAKRRAATN ISFGQGAQHS ARDPSGGGGY EPDMEAMAQV  240
KEMIYRAAAM RPVNLGPEVA AAASAEKPRR KNVRISSDPQ TVAARLRRER VSERLRVLQK  300
LVPGGSKMDT ASMLDEAASY LKFLKSQVQA LETLGTSSKS TSTSGVPSRS QHYNYFGSSS  360
SSNPGFLGLP RRSSNISPAG YVNPNGSTTN TGSKLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	271	EKPRRKN
2	266	271	KPRRKN
3	284	289	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5198	0.0	callus

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG489500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355455	1e-112	AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818336.1	0.0	transcription factor LATE FLOWERING-like
Swissprot	A0A0P0WQ90	1e-50	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A2T7DHT3	0.0	A0A2T7DHT3_9POAL; Uncharacterized protein
STRING	Pavir.Eb02901.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.5KG489500.1.p

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]