PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG489500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 397aa MW: 40819.1 Da PI: 7.566 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.5 | 3.7e-06 | 284 | 324 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L Pavir.5KG489500.1.p 284 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 324 599*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.97E-10 | 266 | 329 | No hit | No description |
PROSITE profile | PS50888 | 14.449 | 275 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-12 | 281 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-13 | 281 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-10 | 284 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MDATFGWAGA GHHVDDYFSR QQVGCGRFEM DEAFLGACFG QLQCDGVLAA AGGGDTGACQ 60 VSSNCGAFEG AAGMDSDPLA FLGAGTGDAF DAGLLDAALA FTRELGDGGA VSNGAMLSSY 120 SGTTGGNISS GESNNYSSGG HDTEVVSPTS IMSPTTTAPR PFTHASSHQQ ALHAKRKVAD 180 EYPATGNATT APAPAALPRP GVAKRRAATN ISFGQGAQHS ARDPSGGGGY EPDMEAMAQV 240 KEMIYRAAAM RPVNLGPEVA AAASAEKPRR KNVRISSDPQ TVAARLRRER VSERLRVLQK 300 LVPGGSKMDT ASMLDEAASY LKFLKSQVQA LETLGTSSKS TSTSGVPSRS QHYNYFGSSS 360 SSNPGFLGLP RRSSNISPAG YVNPNGSTTN TGSKLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 271 | EKPRRKN |
2 | 266 | 271 | KPRRKN |
3 | 284 | 289 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5198 | 0.0 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG489500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355455 | 1e-112 | AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818336.1 | 0.0 | transcription factor LATE FLOWERING-like | ||||
Swissprot | A0A0P0WQ90 | 1e-50 | LF_ORYSJ; Transcription factor LATE FLOWERING | ||||
TrEMBL | A0A2T7DHT3 | 0.0 | A0A2T7DHT3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb02901.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1546 | 37 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 3e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG489500.1.p |
Publications ? help Back to Top | |||
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