PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.5KG489300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 292aa MW: 31802.3 Da PI: 10.1752 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.3 | 6.3e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+e l ++v ++G g W+tI + R+ ++k++w+++ Pavir.5KG489300.1.p 5 KQKWTSEEEEALRRGVLKHGAGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56 79***********************************9************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.143 | 1 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-15 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.42E-20 | 6 | 56 | No hit | No description |
SMART | SM00526 | 6.5E-13 | 114 | 179 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 2.0E-12 | 115 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.54E-14 | 115 | 194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 22.818 | 116 | 185 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 1.8E-8 | 117 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MGAPKQKWTS EEEEALRRGV LKHGAGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA 60 SGMGSRDKTR GPRTTGPSCS PLSTSQASSQ ASVAPVANKV AEAPPGAEKK QQEVKPHPKY 120 GAMILEALSE LNEPNGTELT EICSFIEQRH LVPTTFRRVI GTKLRRLVDS KKIEKVDTKS 180 YRLADSFATR TPAPIKASAP KQKDPSKPSK VSKNLGLFAT SSPALEAAMA AAAKVADAEV 240 KAHDAHDQMM EAERILKMAE KTESLLTIAA EIYDRCSRGE ITTLNPPQRE V* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.11511 | 0.0 | callus| leaf| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00231 | DAP | Transfer from AT1G72740 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.5KG489300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815372.1 | 1e-165 | glycylpeptide N-tetradecanoyltransferase 1 | ||||
Swissprot | Q6WLH4 | 1e-133 | SMH3_MAIZE; Single myb histone 3 | ||||
TrEMBL | A0A2S3HSG4 | 1e-172 | A0A2S3HSG4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DHV4 | 1e-172 | A0A2T7DHV4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea02570.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9247 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49950.3 | 8e-43 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.5KG489300.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|