PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.5KG479700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 318aa MW: 33528.9 Da PI: 7.5017 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W++++r g+ R++k+c++rw +yl Pavir.5KG479700.1.p 14 RGLWSPEEDEKLIKYITTHGHGCWSSVPRQAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.6e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l+v++++ lG++ W+ Ia++++ gRt++++k++w++ Pavir.5KG479700.1.p 67 RGSFSQQEEALIVELHRVLGNR-WAQIAKHLP-GRTDNEVKNFWNS 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.665 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.91E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.321 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.51E-12 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 318 aa Download sequence Send to blast |
MGHHSCCNKQ KVRRGLWSPE EDEKLIKYIT THGHGCWSSV PRQAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SQQEEALIVE LHRVLGNRWA QIAKHLPGRT DNEVKNFWNS TIKKKLISQA 120 VGSLHPDLYY NILDGAAGQG MAAAGCAPLN GADNAAAQAA TLSAQSPPPM VHTPAAAWAD 180 FVSQPLFLPG NNGVLGGGGN DNLHQYGVDG DFIKLCRAAD AFPPPESGPA GGVASQCKPA 240 ADLVAQQDDE GAAAAAVRSF PAFLEPKGGG RAFAADPAAM GPVMDFMEAI LGSSAVSASS 300 VESFSASTGM QSHCWIP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-31 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.5KG479700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU958734 | 0.0 | EU958734.1 Zea mays clone 1711992 MYB9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969714.1 | 0.0 | transcription factor MYB86 isoform X2 | ||||
TrEMBL | K3XK96 | 0.0 | K3XK96_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ea02594.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12813 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13890.2 | 4e-76 | myb domain protein 26 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.5KG479700.1.p |