PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.5KG474900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 235aa MW: 24797.8 Da PI: 6.2344 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.4 | 9.4e-31 | 149 | 207 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh Pavir.5KG474900.2.p 149 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKDDPSYVVTMYEGVHNHV 207 59********************************************************5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-32 | 136 | 208 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-27 | 142 | 208 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.664 | 144 | 209 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-34 | 149 | 208 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-24 | 150 | 206 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MALASCDSLP ADAVCFFPAM ACRHPCDGAG AGSGLAASAF YGGARSPAAA LLFSRPQLAF 60 GGAALTGLAP PRQPDAVFEC LSEEDVSSVV PGTTFGPPPP EMPVEYAGPD AASGYAHHVM 120 GAAAMAGAEG STRTTDRIAF RVRSEEEVLD DGYKWRKYGK KSVKNSPNPR NYYRCSTEGC 180 NVKKRVERDK DDPSYVVTMY EGVHNHVSPG TIYYATQDVA SGRFFVAGMH QALD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-23 | 139 | 209 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-23 | 139 | 209 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.5KG474900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KU058612 | 1e-102 | KU058612.1 UNVERIFIED: Panicum miliaceum WRKY24-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817958.1 | 1e-125 | probable WRKY transcription factor 57 | ||||
Swissprot | Q93WU9 | 2e-37 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A2S3HST6 | 1e-124 | A0A2S3HST6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea02619.1.p | 1e-143 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64810.1 | 2e-38 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.5KG474900.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|