PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG460200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 83aa MW: 9338.26 Da PI: 6.8069 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.8 | 1.4e-09 | 37 | 76 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +T+ E++l + +++ G++ W++Ia +++ gRt++++ +w Pavir.5KG460200.2.p 37 FTEAEEDLVSRMHRLVGNR-WELIAGRIP-GRTAEEVEMFWS 76 9******************.*********.*******99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.0E-7 | 33 | 81 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.18E-8 | 36 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.24E-7 | 37 | 75 | No hit | No description |
Pfam | PF00249 | 1.4E-8 | 37 | 76 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.539 | 37 | 79 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-12 | 37 | 77 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MDSSSGSRSS SRDKKSKDND LHEAKEANST AQNFVDFTEA EEDLVSRMHR LVGNRWELIA 60 GRIPGRTAEE VEMFWSKKHQ GK* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Ubiquitous in young leaves. Later, restricted to the leaf base in the trichome initiation zone. In mature leaves, confined to trichome cells. {ECO:0000269|PubMed:12356720}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, siliques and inflorescences. {ECO:0000269|PubMed:12356720}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG460200.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU973098 | 9e-65 | EU973098.1 Zea mays clone 393226 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ727835 | 9e-65 | KJ727835.1 Zea mays clone pUT5788 MYB-related transcription factor (MYBR97) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458170.1 | 5e-42 | MYB-like transcription factor ETC3 | ||||
Swissprot | Q8GV05 | 2e-19 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | C5XR42 | 1e-40 | C5XR42_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Eb02165.1.p | 3e-46 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 6e-21 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG460200.2.p |