PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG455800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 230aa MW: 25211.7 Da PI: 9.8161 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.9e-19 | 77 | 130 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F+ n++++ +++e LA kl+L rqV vWFqNrRa+ k Pavir.5KG455800.1.p 77 KKLRLSKEQCRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTK 130 67789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.4 | 1.9e-38 | 77 | 164 | 2 | 89 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk+rlskeq +lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E ++e+Lkr++ +l+een+rL++eveeLr+ Pavir.5KG455800.1.p 77 KKLRLSKEQCRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTKLKQTELECEYLKRCFGSLTEENRRLQREVEELRA 164 9*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 50 | 133 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.13E-19 | 69 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.714 | 72 | 132 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-15 | 74 | 136 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.82E-14 | 75 | 133 | No hit | No description |
Pfam | PF00046 | 4.6E-16 | 77 | 130 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 107 | 130 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.1E-9 | 132 | 165 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.7E-22 | 132 | 175 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MGSTSPSGLE LTMAVPGLSS SSGSEGGFGC NAGHGSRNAA MRDLDMNQPA SGGEEEEFPM 60 GSVEEDEEER GAGHRPKKLR LSKEQCRLLE ESFRLNHTLT PKQKEALAVK LKLRPRQVEV 120 WFQNRRARTK LKQTELECEY LKRCFGSLTE ENRRLQREVE ELRAMRVAPP TVLSPHTRQP 180 LPASALTMCP RCERITAATT TGAGAPAART PRPAAAAANP FHRGVPIRR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 132 | RRARTKLKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG455800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062688 | 0.0 | BT062688.2 Zea mays full-length cDNA clone ZM_BFb0333H18 mRNA, complete cds. | |||
GenBank | EU966190 | 0.0 | EU966190.1 Zea mays clone 292384 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds. | |||
GenBank | KJ728248 | 0.0 | KJ728248.1 Zea mays clone pUT6525 HB transcription factor (HB46) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819203.1 | 1e-123 | homeobox-leucine zipper protein HOX3-like | ||||
Swissprot | Q0JKX1 | 1e-119 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 1e-119 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A2T7DJ80 | 1e-130 | A0A2T7DJ80_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea02204.1.p | 1e-165 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6826 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 9e-60 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG455800.1.p |