PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG445000.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 344aa MW: 36882.7 Da PI: 8.346 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.4 | 3.2e-15 | 268 | 293 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yG++C+FaHg Pavir.5KG445000.3.p 268 FKTELCNKWEETGACPYGEQCQFAHG 293 79***********************9 PP | |||||||
2 | zf-CCCH | 17.5 | 7.3e-06 | 306 | 331 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt Cr +++ C+yG rC+F H+ Pavir.5KG445000.3.p 306 YKTQVCRMVLAGEVCPYGHRCHFRHS 331 99*********66**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-18 | 264 | 300 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-10 | 265 | 299 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 267 | 295 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-9 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-12 | 268 | 293 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-12 | 301 | 331 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-8 | 301 | 334 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-5 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.535 | 305 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MQEALLSPGN AGSLRSALEL KPFAFGDQRL ASPRYLNLAC GGGGDDAVDA LFRCSSPFSP 60 SFGFSSPSPL AASSSVSLSP SSSASLVDDC DDAAADAATG HRLQLARLAL QYQEAADRYE 120 LCLARLAEAA DEAAALRREN AELRAANGDL TRRLALLRDI GKQAAAAAIA DEVRRLRFVD 180 QKAAKERPPE KLAVLPKSIS VRSNEYLKMK LPNQAPATPA ANNSKPRAAN ATKPSSRAYM 240 GDGGGRKGEE ATKEAGGTEL EVCNQGMFKT ELCNKWEETG ACPYGEQCQF AHGVAELRPV 300 IRHPRYKTQV CRMVLAGEVC PYGHRCHFRH SLTQAERLLL PRP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 8e-23 | 268 | 331 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG445000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042147 | 0.0 | BT042147.1 Zea mays full-length cDNA clone ZM_BFb0146F09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969303.1 | 1e-167 | zinc finger CCCH domain-containing protein 9 isoform X2 | ||||
Swissprot | A2ZVY5 | 1e-112 | C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9 | ||||
TrEMBL | K3XJJ0 | 1e-165 | K3XJJ0_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ea02238.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 2e-47 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG445000.3.p |