PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG438600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 122aa MW: 13362.6 Da PI: 5.2323 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 22.9 | 2.3e-07 | 38 | 98 | 15 | 72 |
NAM 15 vveyLkkkvegkklelee..vikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgk 72 +v+yL++k+++++l++ + vi d y +P++L +k+ ++++ wy Fs+rd+ +g+ Pavir.5KG438600.1.p 38 IVHYLRRKLRDEPLPTGTglVIGCRDAYAEHPKKLVTKLGEGSNgAWYLFSPRDTGDGEGE 98 67***********777443247777**********97666655569*******99877655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 9.676 | 24 | 122 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.89E-10 | 38 | 106 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MCESTSQAAP GDEAEYNEES TWPSPASASP RRTTTSSIVH YLRRKLRDEP LPTGTGLVIG 60 CRDAYAEHPK KLVTKLGEGS NGAWYLFSPR DTGDGEGEGH WKAVEAEVLG GAEHERNSFR 120 WA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG438600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682895.1 | 2e-29 | NAC domain-containing protein 101 | ||||
TrEMBL | K3XSE9 | 4e-28 | K3XSE9_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ea03223.1.p | 1e-85 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP29337 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 4e-07 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG438600.1.p |