PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG437100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 422aa    MW: 45329.3 Da    PI: 8.7816
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG437100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.9e-1176135155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++ +g+++A+++d   ++    k+ ++++lg f+ +e A   ++ a++k++g
  Pavir.5KG437100.1.p  76 SIYRGVTRHRATGKFEAHLWDRHARCpaksKKgRQVYLGAFDNEEAAGHTYDLAALKYWG 135
                          57*******************444668767457**********99999*********998 PP
2AP253.17.8e-17181233156
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          s y+GV  ++++g+W+A+I         + k+ +lg fgt eeAa+a++ a+++l+g+
  Pavir.5KG437100.1.p 181 SEYRGVAKHHRNGKWEARIGYaN-----CkKYLYLGIFGTQEEAARAYDLAALELRGH 233
                          569***************76633.....44**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.90E-1376146No hitNo description
SuperFamilySSF541711.83E-1176147IPR016177DNA-binding domain
PfamPF008475.7E-876135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-1377147IPR001471AP2/ERF domain
PROSITE profilePS5103217.95277146IPR001471AP2/ERF domain
SMARTSM003803.1E-1677152IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-16181242IPR016177DNA-binding domain
CDDcd000182.86E-19181242No hitNo description
PROSITE profilePS5103217.372182240IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-17182240IPR001471AP2/ERF domain
PfamPF008471.9E-12182233IPR001471AP2/ERF domain
SMARTSM003801.0E-25182246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MTTRPHCAAT PLSPSSRASS PSSLSCVSSA ASSSGSCYVP ASWLTKCGGK KKRSSRRRAK  60
NGAAGGAVAV PRRNSSIYRG VTRHRATGKF EAHLWDRHAR CPAKSKKGRQ VYLGAFDNEE  120
AAGHTYDLAA LKYWGSESSN CKLNFPLELY RHEHERMQCM SREAYLAALR RKSSSFSRGA  180
SEYRGVAKHH RNGKWEARIG YANCKKYLYL GIFGTQEEAA RAYDLAALEL RGHAAITNFD  240
ISSYTDYLQQ LEQPIPKAQP KPALKPKPEP VDEEALLPLP MAAGPIPAPL LTPKPEPEDE  300
LAGPLAPLPP GPVLRDADDV DHAIAVILQA LCMDPADFEA RYPARGARAP GWPSDDHQLR  360
GLPLPDAVGF EGDIETLFEA LGSAGPGQGG EVQVQPPAAV PDAAVSCAAA AISSLASGRW  420
W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG437100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493535e-67EU949353.1 Zea mays clone 402937 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814616.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A2S3HQU40.0A0A2S3HQU4_9POAL; Uncharacterized protein
STRINGPavir.Ea03213.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-68AP2 family protein