PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG432300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 311aa    MW: 33464.5 Da    PI: 8.9318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG432300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.95.7e-21241518126
                  NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk....sgyWkatgk 88 
                          hP++eel++ +L++++ g + +   +i+++d+y++ P +L +      + ++++ wyfFs  + k++ g+rk r++     +g W++   
  Pavir.5KG432300.1.p  24 HPSEEELITSFLRPRLGGAPRPR-AFIHDADVYSAGPAELTRgfdpaVAGNGDRAWYFFSAVRAKNRDGQRKARTVGsgeeAGCWHSEAG 112
                          9*******************888.78**************85567766666899********************8553444889****** PP

                  NAM  89 dkevlskkgelvglkktLvfy.kgrapkgektdWvmhey 126
                           ++v++  g+  g ++++ f  ++   + +++ W+m e 
  Pavir.5KG432300.1.p 113 ARPVVDGAGRCLGHRRSFSFVtRAAGGRRVRSGWLMVEL 151
                          ******9**************3334556679*****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.32717169IPR003441NAC domain
SuperFamilySSF1019414.45E-3124169IPR003441NAC domain
PfamPF023651.9E-1124151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVAATRRTTA ARPPPPPATD LAAHPSEEEL ITSFLRPRLG GAPRPRAFIH DADVYSAGPA  60
ELTRGFDPAV AGNGDRAWYF FSAVRAKNRD GQRKARTVGS GEEAGCWHSE AGARPVVDGA  120
GRCLGHRRSF SFVTRAAGGR RVRSGWLMVE LGLDDADADG VALCKIYFSP RARANEGAAA  180
SSAGRKRKQA GAPADDDPVA ASPRQRRHEA AAPRDGAVTA GAAESAQDGV GLVDDKSSSD  240
GDDGPCGLWK EGMFLPWWMR NRDRLMKEHG IVDRSDEELL KTLGLDKVMK LLNRDYGDSL  300
LFRPWIPEKH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG432300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657827.15e-84uncharacterized protein LOC103637404
TrEMBLA0A2S3HSV81e-145A0A2S3HSV8_9POAL; Uncharacterized protein
STRINGPavir.Ea02202.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-11NAC family protein