PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG427300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 422aa    MW: 42779.2 Da    PI: 10.5935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG427300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018102122323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          Cp Cgk F+++     H+++H
  Pavir.5KG427300.1.p 102 CPFCGKEFRNHKAVCGHMKVH 122
                          *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0034100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66100127IPR007087Zinc finger, C2H2
SuperFamilySSF576672.92E-7101122No hitNo description
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SuperFamilySSF576672.92E-7269296No hitNo description
PROSITE profilePS501579.058274301IPR007087Zinc finger, C2H2
SMARTSM003552.1274296IPR015880Zinc finger, C2H2-like
PfamPF139120.079274293IPR007087Zinc finger, C2H2
PROSITE patternPS000280276296IPR007087Zinc finger, C2H2
SuperFamilySSF576678.83E-5320350No hitNo description
PfamPF139126.3E-6321346IPR007087Zinc finger, C2H2
SMARTSM003550.15322344IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349322349IPR007087Zinc finger, C2H2
PROSITE patternPS000280324344IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAGSSEDPCR TPRRRRRIAD LYGGGGGPEE GEIVSGHHSG AGTVEYDNSG RDCSSNSDET  60
ISDPVPARYG SGGSTSTTSP AAANSSVGGR AAPSAAAAAL ACPFCGKEFR NHKAVCGHMK  120
VHREQWGIGK ASRGVKRGAP VVVGAWGGTA KRGCCSASRG TASSPIPEPV GQSMAVVVAQ  180
AKIVLDPMPL AFATPNLPPV PASDSVESSS APATRGDATE TVAARAASPP KEKEAVVDLH  240
AAPPPPPAAG EQAPPARQQR VAPPPRGRQD PNGYTCGKCN KWFRTHQGLG GHTVGHKNRE  300
LAAALQGGAA PRGRNAKAGR THACKVCGAE FPGGIHLGGH MRKHWKGAPF NKKPRRVIIQ  360
PLPRPGLTLA RVGSPPAPRP AMAAAGRVLL FGIDIGAGVK TPAGQGGSSS PEASASIGGD  420
K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG427300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3HTA90.0A0A2S3HTA9_9POAL; Uncharacterized protein
STRINGPavir.Ea02280.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-13C2H2 family protein