PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG425900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 382aa    MW: 40853.7 Da    PI: 9.6439
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG425900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.37.1e-23237299163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          +ke+krerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l++ ++kl++e+
  Pavir.5KG425900.1.p 237 DKESKRERRKQSNRESARRSRLRKQAETEELARKVEQLTAENTSLRSEINKLTESSQKLRMEN 299
                          689*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.8E-2912104IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1706.3E-18234297No hitNo description
SMARTSM003389.6E-22237301IPR004827Basic-leucine zipper domain
PfamPF001706.0E-21238299IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.806239302IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-11241296No hitNo description
CDDcd147021.47E-21242290No hitNo description
PROSITE patternPS000360244259IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MIDLEAFTKK NMGHDEAVVT QSSVKAPSPP KDQPAIYPCL DWSTMQAYYG PGVLPPTFFN  60
PGIASGHVPP PFMWGPQNMP PAAFGKPYAA IYPHGGGFLH PFIPLMVNPL SAEPAKSVNS  120
KDNSLSKKLK EIDGTAVSTG SGNSEKTSGD YSLEGSSDGN NQKVSGTPKK RSLDNRTTSG  180
VETCRASAPN EKPGEPGRLA TLSNMRITDT AIKPCVSTGS DFRVSVAPST EWQAKDDKES  240
KRERRKQSNR ESARRSRLRK QAETEELARK VEQLTAENTS LRSEINKLTE SSQKLRMENS  300
ALMEKLADSA SDEEAQEAAA DPQAAAAPPP ARVVKNFLSM MDGAGASRGG GGGSSSRRVE  360
PGAPRLRQLL GSGQGRIQDR N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253259RRSRLRK
2253260RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG425900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817312.10.0G-box-binding factor 3-like
TrEMBLA0A3L6SPI70.0A0A3L6SPI7_PANMI; G-box-binding factor 3-like
STRINGPavir.Ea02315.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.13e-49G-box binding factor 3