PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG422600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 234aa MW: 23314.1 Da PI: 7.4409 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64.6 | 1.1e-20 | 115 | 149 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg+t+TplWR+gp+g+k+LCnaCG++++k+++ Pavir.5KG422600.1.p 115 CANCGATSTPLWRNGPRGPKSLCNACGIRFKKEER 149 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.2E-20 | 109 | 166 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.285 | 109 | 145 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-14 | 111 | 149 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.5E-17 | 113 | 149 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.94E-13 | 114 | 146 | No hit | No description |
Pfam | PF00320 | 3.3E-18 | 115 | 149 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 115 | 140 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MLHEAAPCTC GLLYGTCGGG CSLLFAASDG YYERCGGGGG EVGFGAAGSY GSSVDCTLSL 60 GTSSTRRAEA GAPRAPAAAL PCWPEAAQPV PGCNNGGSQH GGVAEASNAA GARRCANCGA 120 TSTPLWRNGP RGPKSLCNAC GIRFKKEERR AAAAAAAPAA MASDGAVEYA PSYGYARQPQ 180 QWGCYGPASS FGMFGDAGGE VGGPCLPWGL GVMPSSSPAF GAVREMPSLF PYY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG422600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073464 | 1e-44 | AK073464.1 Oryza sativa Japonica Group cDNA clone:J033044C20, full insert sequence. | |||
GenBank | AK101287 | 1e-44 | AK101287.1 Oryza sativa Japonica Group cDNA clone:J033033F09, full insert sequence. | |||
GenBank | DQ784546 | 1e-44 | DQ784546.1 Oryza sativa Japonica Group putative NECK LEAF 1 (NL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815390.1 | 3e-96 | GATA transcription factor 15-like | ||||
TrEMBL | A0A3L6SU77 | 1e-103 | A0A3L6SU77_PANMI; GATA transcription factor 20-like | ||||
STRING | Pavir.Ea02338.1.p | 1e-163 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 1e-15 | GATA transcription factor 20 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG422600.1.p |