PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG421100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 404aa    MW: 41370 Da    PI: 7.0304
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG421100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.75e-33205262259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp vv++tYeg+H+h+
  Pavir.5KG421100.1.p 205 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCLVKKRVERSYQDPAVVITTYEGKHTHP 262
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-34189264IPR003657WRKY domain
SuperFamilySSF1182902.09E-29196264IPR003657WRKY domain
PROSITE profilePS5081132.443199264IPR003657WRKY domain
SMARTSM007745.3E-39204263IPR003657WRKY domain
PfamPF031069.9E-26205262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSSGEFHFHD ELASLFAQRP AAPGLGEMMA QQQQAPASWF ADYLHAGAGA PGMGMDYDLL  60
CRALDLPVPG DDVVKRELLV VDTGGGGGGF GAPTPTPSGG GTAPVTPNTT SSMSSSSSEA  120
AGGGGGGGGG GGGGGFGAGE EDSLKKEEGE EEGEESKELG GKGEDDADKS KKGAAAAGKA  180
KGKGEKRQRQ PRFAFMTKSE VDHLEDGYRW RKYGQKAVKN SPYPRSYYRC TTQKCLVKKR  240
VERSYQDPAV VITTYEGKHT HPIPATLRGS THLLAAQLHH HYHAGGGGGG HHLGGAFPPL  300
PQMGAPFGRS SSGVGGGSVI DVLGLLPPRG AHSNHTVPPA IGLASSHGMS GPTSTVAGAA  360
TTTASSSPPS LQMQHFMAQD FGLLQDMLPP PPFVHSNGGN IQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27195265878Probable WRKY transcription factor 4
2lex_A1e-27195265878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG421100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0681160.0BT068116.1 Zea mays full-length cDNA clone ZM_BFb0045M20 mRNA, complete cds.
GenBankKJ7275430.0KJ727543.1 Zea mays clone pUT5403 WRKY transcription factor (WRKY95) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969457.10.0probable WRKY transcription factor 48
TrEMBLK3XIU31e-179K3XIU3_SETIT; Uncharacterized protein
STRINGPavir.J35195.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.17e-49WRKY DNA-binding protein 71