PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG413900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 526aa MW: 57511 Da PI: 6.7705 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.8 | 2.7e-11 | 138 | 163 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C f++rt tC+yG++CkF H++ Pavir.5KG413900.1.p 138 GKKDCAFYMRTRTCNYGETCKFDHPQ 163 6789********************97 PP | |||||||
2 | zf-CCCH | 20.2 | 1e-06 | 185 | 211 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f ++ C++ ++CkF+H++ Pavir.5KG413900.1.p 185 PGEPDCPYFVKSNSCRFKSKCKFNHPK 211 5789*********************96 PP | |||||||
3 | zf-CCCH | 36.7 | 6.8e-12 | 240 | 264 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+ +tG Ck+G++CkF+H++ Pavir.5KG413900.1.p 240 EPVCSFYVKTGKCKFGAKCKFNHPK 264 789********************96 PP | |||||||
4 | zf-CCCH | 33.9 | 5.4e-11 | 318 | 343 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f+++tG CkyG+ C+F+H+ Pavir.5KG413900.1.p 318 PGEVDCLFYMKTGSCKYGSICRFNHP 343 57899********************9 PP | |||||||
5 | zf-CCCH | 34.1 | 4.7e-11 | 404 | 428 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG Cky +CkF+H+ Pavir.5KG413900.1.p 404 GETVCDFYMKTGSCKYSQKCKFHHP 428 6789********************8 PP | |||||||
6 | zf-CCCH | 36.3 | 9.4e-12 | 460 | 483 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e+C f++r+GtC+yG CkF H+p Pavir.5KG413900.1.p 460 EICAFYMRSGTCRYGVLCKFDHPP 483 89********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.413 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0032 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 137 | 163 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-9 | 138 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-4 | 142 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.013 | 184 | 211 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.051 | 184 | 212 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 186 | 211 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.901 | 237 | 265 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 237 | 265 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-6 | 237 | 264 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 240 | 264 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 242 | 263 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.441 | 317 | 345 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-5 | 317 | 344 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 319 | 343 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 321 | 345 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-4 | 323 | 342 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 401 | 430 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.845 | 402 | 430 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 402 | 429 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-9 | 404 | 428 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-5 | 407 | 428 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.873 | 456 | 484 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 456 | 483 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-5 | 458 | 482 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 460 | 483 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-5 | 460 | 481 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MSDPLYPFSR GALPGGDGKP PPPRYSDFEV DLIAARYASS PPPPPYPSAA DASAFDSHVG 60 AFDSHIGAFD SHVGAFDSHI GAFDLYVGAG RYAGALYHQS FMGSHSTVGQ NEALYSSNTM 120 AKRPRLESSL PMYPQRPGKK DCAFYMRTRT CNYGETCKFD HPQWVPEGGV PNWKEVPEDS 180 YPERPGEPDC PYFVKSNSCR FKSKCKFNHP KEKVNALCAG TDNGQSLIAD SAILPVRPSE 240 PVCSFYVKTG KCKFGAKCKF NHPKDVEIAP VIAKETIYTA TTDAAAHIGT ADSSVQAKAH 300 APTAPAEAHN AKGFPIRPGE VDCLFYMKTG SCKYGSICRF NHPYRPVVDV ALMDPLVQDT 360 LPTPAPIDSA AVLNPAANIM QCFDFYATHV PIEPLPIMYP QRPGETVCDF YMKTGSCKYS 420 QKCKFHHPIN RSVHDANENE DPQQPVTLTL AGLPRREDAE ICAFYMRSGT CRYGVLCKFD 480 HPPLQEAIAK LQAGGKEGEK EEGEEKEGVE KKGVEEKEGL SVVLR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10299 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG413900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815023.1 | 0.0 | zinc finger CCCH domain-containing protein 8-like isoform X3 | ||||
Swissprot | Q5ZDJ6 | 0.0 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | A0A2S3HTX7 | 0.0 | A0A2S3HTX7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea02049.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-131 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG413900.1.p |
Publications ? help Back to Top | |||
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