PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG387000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 287aa    MW: 30085.3 Da    PI: 8.4228
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG387000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.2e-14122166347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W++eE+ +++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
  Pavir.5KG387000.1.p 122 PWSEEEHRQFLAGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKF 166
                          8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.598318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.013115171IPR017930Myb domain
SuperFamilySSF466894.04E-17116172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-17118170IPR006447Myb domain, plants
SMARTSM007177.9E-11119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-11119162IPR009057Homeodomain-like
CDDcd001677.65E-10122167No hitNo description
PfamPF002497.9E-11122165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MARKCSHCGN HGHNSRTCGL GHSRETMPCQ GGENGGGGGG GGLRLFGVQV HAGGGAASMK  60
KSYSMDCLQL AAPAGCSLVS PSSSSSSSLL LSIEEGLERA ATNGYLSDGS ARVVAERKKG  120
VPWSEEEHRQ FLAGLEKLGK GDWRGISRNY VTTRTPTQVA SHAQKFFLRQ SSMGKKKRRS  180
SLFDMVPICE NNSSVSDPPR SEGASTSLSL NVPRHERAER RTAAFDLNST EEEDGRADAS  240
SASGAGTRPF PAEQQPSHHG PAGHGHHCSP LDLELGMSLS TPSVGT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174178KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.146200.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG387000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819826.11e-152transcription factor MYBS3-like
SwissprotQ7XC574e-50MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A3L6SHL61e-162A0A3L6SHL6_PANMI; Transcription factor MYB1R1-like
STRINGPavir.Ea02123.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-50MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]