PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG379800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 201aa MW: 22601.5 Da PI: 8.0585 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 31.6 | 5.5e-10 | 73 | 111 | 52 | 90 |
FAR1 52 rrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + +++++tgC+a++++ +++d+ w+v+k+ +eHnH+l+ Pavir.5KG379800.1.p 73 DHLNTTQHTGCRAMVRLLRSDDHGWYVAKFIEEHNHPLS 111 45678999*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.0E-7 | 74 | 111 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSFLDVILGA LMAAPMILGT DARVEEGAVR KNEAKCGKHF RNHSFFPHHL DFDVHFAYRW 60 GQRGGMREGS GPDHLNTTQH TGCRAMVRLL RSDDHGWYVA KFIEEHNHPL SMCSDERHQW 120 NPHNRIDPVT KEFIRSPRSN NIPLSRLYGV LGSALGGSSE SIFTRSSLRG VCSRLSQESI 180 VDDIGKTMDS LRTMQTQDPN * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.14199 | 1e-175 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG379800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | T1MS23 | 3e-35 | T1MS23_TRIUA; Uncharacterized protein | ||||
STRING | Pavir.J17187.1.p | 6e-60 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-11 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG379800.1.p |