PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG370500.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 658aa    MW: 74048.4 Da    PI: 7.6111
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG370500.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.88e-445016291127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lppGfrF+Ptdeel+v+yL+k++++k++++  +++e+diy+++PwdLp k v+++e  wyfFs++ +ky +++r+ ra+ sgyW+  g+d
  Pavir.5KG370500.5.p 501 LPPGFRFQPTDEELIVHYLCKRAAAKPCPI-PIVAELDIYQFDPWDLPaKGVNGGEGVWYFFSPSTHKYGNSSRPCRAAGSGYWNVVGTD 589
                          79****************************.88***************678888888********************************* PP

                  NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                          k+++s+  +ge+ g+ ktLvfy+gr p+g+kt+W+m+eyr
  Pavir.5KG370500.5.p 590 KDIFSStaDGEVLGMYKTLVFYRGRWPRGQKTTWFMKEYR 629
                          ****99889999***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078871.4E-1786224IPR012416CALMODULIN-BINDING PROTEIN60
PfamPF078871.0E-40348497IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF1019411.03E-48500636IPR003441NAC domain
PROSITE profilePS5100547.702501653IPR003441NAC domain
PfamPF023652.5E-21502629IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MRKQSKKLTE SKDDTSEIRK QLEKLTESYN DQSKKLEKLT ESHSDLCKQL ELHTKGTSGD  60
DSAASRSQSN QVQQPRYKLK FTSEVTEKIE KGQSIDISVA LVEYNNEDQT VEDEPLASAI  120
VELVVVNAEF NQHDNQYNWS REDFERNIKK ARQPNSAAGG VDQSVKSIVS NGRFNLAHGV  180
KSHSGSKIFS NSSNKKVRLG VMVVSPTEER VLEGLSNPFF VRGHDRPNRQ DGLLSSALVG  240
IGTGQNFMGD DHVPFHAIGT EFNTNQTALP VHLILDTPNV ELRKRRWDLL EQLMPLYSCQ  300
HKSIKSVLPT MRLMSEKTPR RGGVLIEPLE PDDSDERRPL KRMMHNKYRL RFVNKVCETY  360
YTREQIKAYD GNHLKVALFD ENNTRITYGP LSSASVEVVA LHGDFSVDGD QDYWTWDEFS  420
RGIVCPRPGK EGSVLGGDLI LALDDGEACL ADAFFQVTSF VARTGKFKMG VKMLASGRQD  480
ERIQEGISEA FWVKDRRVGD LPPGFRFQPT DEELIVHYLC KRAAAKPCPI PIVAELDIYQ  540
FDPWDLPAKG VNGGEGVWYF FSPSTHKYGN SSRPCRAAGS GYWNVVGTDK DIFSSTADGE  600
VLGMYKTLVF YRGRWPRGQK TTWFMKEYRR LPADGTKVSP STSSMMTTSI WSSKFGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4650062914139Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG370500.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694641.11e-176PREDICTED: uncharacterized protein LOC107304550
STRINGPavir.J04622.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.25e-47NAC domain containing protein 47