PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.5KG353100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 34578.5 Da PI: 6.2348 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.3e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ + ++G g+W+++++ g+ R++k+c++rw +yl Pavir.5KG353100.1.p 15 RGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 62 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9.2e-16 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++ ++k lG++ W+ Ia+ ++ gRt++++k++w++ Pavir.5KG353100.1.p 68 RGSFSQQEEDLIISLHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 111 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.404 | 10 | 62 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 10 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.62E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.88E-12 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.073 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-26 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.86E-11 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 320 aa Download sequence Send to blast |
MGREAAAAAR PKLRRGLWSP EEDEKLYNHI IRYGVGCWSS VPKLAGLERC GKSCRLRWIN 60 YLRPDLKRGS FSQQEEDLII SLHKILGNRW SQIASQLPGR TDNEIKNFWN SCIKKKLRQR 120 GIDPATHKPL EDDAAAAAAN SGEAPRDDCN KLLPATADDH CGFAMGGASS DPLAPHSPTV 180 SFDPLSVTNV PAMQGSYGAA HSFQPDNLCD YGGAAAYSAA AYTGGGADSS SNSNGTWTCG 240 NAVGGEPMPQ LDMFGREAYH QFDPANKYSP WQQHEAARLH DGIGGAAGFP IRSMSRDLPD 300 SCFDLARSGL EDEFSVDFL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 11 | 117 | 3 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.18440 | 0.0 | root| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.5KG353100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HF679421 | 1e-164 | HF679421.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB15 protein. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817553.1 | 0.0 | myb-related protein Hv33-like | ||||
Swissprot | P20027 | 5e-77 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A3L6R106 | 0.0 | A0A3L6R106_PANMI; Myb-related protein Hv33-like | ||||
STRING | Pavir.J18139.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11164 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-72 | myb domain protein 86 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.5KG353100.1.p |