PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG345600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 422aa    MW: 45051.2 Da    PI: 4.7327
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG345600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.31.8e-121248440
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                         +    r+ +f  R++g+ KKA ELSvLC+++vav+ +
  Pavir.5KG345600.1.p 12 DKAGSRTRSFKGRKEGLKKKARELSVLCGVDVAVVCA 48
                         55567899**************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.965146IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-10165IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-16181IPR002100Transcription factor, MADS-box
CDDcd001203.29E-17347No hitNo description
PfamPF003192.3E-121152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MPRRKIQMAL IDKAGSRTRS FKGRKEGLKK KARELSVLCG VDVAVVCARP GGGGGAPAVW  60
EFGSAGVIGR YRRLPADRRA KHTHLSYLNA ELRKEKDKLA KEWQEGPKQL APPGAASLKG  120
VNLEELLGSI DAALLATARR RKALGVPDDG VAAVGSDDDM EAWIDELTWH GVELNNPLET  180
SMAMQPAASG VQYINNDGSQ GDMGGGNQYL QQMGGNGDEN GHGQLAWDTC QLRNTVSCSC  240
PDYGFQYDTG SNCSYSDMAG GCPQMPVPSS AIAYDGCWFD QALMWGADES PRDAVVPAEY  300
YHPSLDITCN PAYMPPAEHS GVGVPAIGLD GGFMDASGHG YGTQCLADYF ECPDGAQQYG  360
DEPLHYLSDV ADGGVRSCSN SLVQSSPSQM RQMIPESRNL GWWKDSTEQS GVAFDVPQAA  420
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG345600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7DCL90.0A0A2T7DCL9_9POAL; Uncharacterized protein
STRINGPavir.J13519.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-10AGAMOUS-like 24