PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG344900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 450aa    MW: 46009.8 Da    PI: 8.4783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG344900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.2e-07376416954
                          HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  Pavir.5KG344900.1.p 376 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 416
                          69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-11373421No hitNo description
SMARTSM003534.0E-13373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-13373427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-11375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-5376416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MRQCQPPPPA LITSIRFRPA ALPRINQGFI CKMDHSFSDM ILSETAWSGG GDGGSVLLPP  60
PEVGGVGGVG VGVEGGNMSV LERLVLDEAL AAAILELQGI QAPAACAGKA PAAGGGVVGE  120
AVAFPAMATP TPAYADVDAD VLQRQQHRHR HQGAMGMAPD YDLTPATAAV AVTTAPAAFI  180
TGAAAAVDSG GLVVDAPVFS GHETGAPGAA TATAAAAVTA TTTSQRCEEG KGGGGRRQRR  240
PTRKRKAAAE PSSVPAQEST LCSLLASTTA GEGGGIQIAF STSAQAPAGG AKRAKPSLSG  300
SGSSSISFDG RNAGAGNGGG VDDPMYEPDT EALAQVKEMI YRAAAMRPVS LGSDDAGERP  360
RRRNVRISSD PQTVAARQRR ERISERLRVL QKLVPGGAKM DTASMLDEAA NYLRFLKSQV  420
RELQTLDRRN YASNVNNAIA APPPPWPGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376381RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG344900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031411e-154AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032961e-154AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149571e-154AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-154CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814680.11e-177transcription factor LATE FLOWERING-like
TrEMBLA0A3L6STE10.0A0A3L6STE1_PANMI; Transcription factor bHLH87-like
STRINGPavir.Ea01618.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-34bHLH family protein