PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG343200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 516aa MW: 60492.6 Da PI: 5.6001

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG343200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.3	6.1e-19	26	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+YA GFsvrks+ + +++++eit r+ + ++e k +++ k+rr+r tr+gC akl++ +++ +g+w+v+++ eHnH l Pavir.5KG343200.1.p 26 QFYNAYALGKGFSVRKSYVEWNSDHTEITLRRRQGYREDKYVKKE---IKKRRPRDITRVGCPAKLVIALDRnSGQWYVKNFIDEHNHLL 112 6*****************9999999999986666666655544...459***************999*************99 PP FAR1 90 ap 91 ap Pavir.5KG343200.1.p 113 AP 114 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-17	26	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.4E-32	235	329	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MADLENLMEY SEIVSKMFAD EDEGYQFYNA YALGKGFSVR KSYVEWNSDH TEITLRRRQG 60 YREDKYVKKE IKKRRPRDIT RVGCPAKLVI ALDRNSGQWY VKNFIDEHNH LLAPADLGCL 120 LRSHRSISDA QKAEIVELGV AGIRKHQIFE IMEMQYGGYD EVGYTSRDLY NFCHLYKQEI 180 IAADDAQIII SHLIERQNRD SDFFFKYMTD GEGHLQGLFW CDTQCLLDYE AFGDVVVFDS 240 TYKTNRYNLP LVPFVGVNHH YRTIIFGCEI ISHENIKSYV WLLKIFTEAN VQKHPISMIT 300 DEDLAMQRAI SVVWPNSLHR LCGWHIEQNL VRNIHDDTVK AEFRIFIYDL CSIEEIERKW 360 QAFFEKYDVI EDSWLYQMYE ARATWCAAYH AGNHYLGLRS NQRSESMNSR LQMKLDGKMT 420 LLEMVQHYES CLTKVRRIEE DDDANALQYE PFTDLDASIL EVNAKKRFTP NVFKTKVQFS 480 VEAAKKCSLV EILDGDDTTE YIIGRSDRDM MYYVN*

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MADLENLMEY SEIVSKMFAD EDEGYQFYNA YALGKGFSVR KSYVEWNSDH TEITLRRRQG  60
YREDKYVKKE IKKRRPRDIT RVGCPAKLVI ALDRNSGQWY VKNFIDEHNH LLAPADLGCL  120
LRSHRSISDA QKAEIVELGV AGIRKHQIFE IMEMQYGGYD EVGYTSRDLY NFCHLYKQEI  180
IAADDAQIII SHLIERQNRD SDFFFKYMTD GEGHLQGLFW CDTQCLLDYE AFGDVVVFDS  240
TYKTNRYNLP LVPFVGVNHH YRTIIFGCEI ISHENIKSYV WLLKIFTEAN VQKHPISMIT  300
DEDLAMQRAI SVVWPNSLHR LCGWHIEQNL VRNIHDDTVK AEFRIFIYDL CSIEEIERKW  360
QAFFEKYDVI EDSWLYQMYE ARATWCAAYH AGNHYLGLRS NQRSESMNSR LQMKLDGKMT  420
LLEMVQHYES CLTKVRRIEE DDDANALQYE PFTDLDASIL EVNAKKRFTP NVFKTKVQFS  480
VEAAKKCSLV EILDGDDTTE YIIGRSDRDM MYYVN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	74	RRRQGYREDKYVKKEIKKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG343200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441960.2	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K2DKR4	0.0	A0A2K2DKR4_BRADI; Uncharacterized protein
STRING	Pavir.Ea01546.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-74	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.5KG343200.1.p