PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG340900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 464aa    MW: 48797.8 Da    PI: 8.7604
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG340900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-065274123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++Cgk F r  nL+ H r H
  Pavir.5KG340900.1.p 52 FVCEICGKGFQRDQNLQLHRRGH 74
                         89*******************88 PP
2zf-C2H210.60.0017130152123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H + +
  Pavir.5KG340900.1.p 130 WKCDKCSKKYAVHSDWKAHAKIC 152
                          58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.88E-85174No hitNo description
SMARTSM003550.0125274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6145274IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-55274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SMARTSM0035513095125IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.88E-8125150No hitNo description
SMARTSM00355150130150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MSSSNLTSSA SGGPNAAPAA GNKRKRSLPG NPDPDAEVVA LSPATLMATN RFVCEICGKG  60
FQRDQNLQLH RRGHNLPWKL KQRAAGKEAQ RKKVYVCPEA SCVHHDPARA LGDLTGIKKH  120
FFRKHGEKKW KCDKCSKKYA VHSDWKAHAK ICGTREYKCD CGTIFSRRDS FITHRAFCDA  180
LTEESAKAIG LGAMAAAAAP AHHHPLLFSP PPPQVIQHQV QDLAALQENP HHHHSQVMQP  240
PQAQQQQQQH CNYAMKTEMP PWPAMAYDHH AHPLLQPLCN AAAGAAQSSA TSAPPPPAAS  300
AHLSATALLQ KAAQMGATIG GAGAGAGAHY SQMAGPAASA PGGATFGLGL PGLSAQQQPV  360
DGGVMGGLAR TASRGRSGED AGGGAGGGGA DGMTRDFLGL RAFSHRDILD LAGFDSSCMG  420
AIAANANMTC YEPQQHAQAE QQQQQQQQQS SNEPWHGGMG SHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-34126191368Zinc finger protein JACKDAW
5b3h_F8e-34126191368Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.316051e-135root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG340900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0561510.0BT056151.1 Zea mays full-length cDNA clone ZM_BFb0048E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969529.10.0protein indeterminate-domain 7
TrEMBLK3XHB60.0K3XHB6_SETIT; Uncharacterized protein
STRINGPavir.Ea01893.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-90C2H2-like zinc finger protein