PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG339800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 46252.7 Da PI: 5.1171 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.3 | 1.8e-10 | 253 | 297 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f++L +llP++ K +K ++L A ++k L Pavir.5KG339800.2.p 253 HMMSERKRREKLNDSFHTLSSLLPPC-----SKKDKTTVLINAASFLKTL 297 7899*********************9.....6999********9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-15 | 247 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.96 | 248 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 253 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.02E-10 | 253 | 302 | No hit | No description |
Pfam | PF00010 | 3.4E-8 | 253 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-11 | 254 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MDEVWCGLDL QQLQLQAGDP LAAPAGLHDQ DPFWPAALAD CAASFLAADT ACFRGVADID 60 LSGGSAASGK AAADGMDTAS FFAADDGHHH HLMPQEQQPV HSSSSLSSKR SLSVDSGGSW 120 STFFPLDDAS LAAAGGLFST PSPSHAAAPA AFAAGEDEAL MRAMMAVISS ASPSSSESSS 180 PPLGQDYTTA APAAVVQPRP ASGGNATSHV TVRSSSLAVG PERTASLTSA AAGGWQQQED 240 AKACSNNSSQ VYHMMSERKR REKLNDSFHT LSSLLPPCSK KDKTTVLINA ASFLKTLEAQ 300 VSELEEKNTK LERYVPREGG AGAGAAAAHR RAKVRISRAG PEERQVSLTV MVMVECDIVD 360 LVLHLLECLR WMSGVSVLSV DADTYSPQAP LKARANIKLQ IMDGDCWDEA LFHEAMTKAV 420 HEATSSPSSS SCAAPAPLVA AAY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 256 | 261 | ERKRRE |
2 | 257 | 262 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG339800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054416 | 0.0 | BT054416.1 Zea mays full-length cDNA clone ZM_BFc0045O17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819658.1 | 0.0 | putative transcription factor bHLH041 | ||||
TrEMBL | A0A3L6R1U8 | 0.0 | A0A3L6R1U8_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ea01566.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 2e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG339800.2.p |