PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG339800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 478aa    MW: 49357 Da    PI: 7.6083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG339800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-10253297554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h + Er+RR+++N++f++L +llP++      K +K ++L  A  ++k L
  Pavir.5KG339800.1.p 253 HMMSERKRREKLNDSFHTLSSLLPPC-----SKKDKTTVLINAASFLKTL 297
                          7899*********************9.....6999********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-15247314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.96248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-10253302No hitNo description
Gene3DG3DSA:4.10.280.101.5E-14253313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8253298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-11254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDEVWCGLDL QQLQLQAGDP LAAPAGLHDQ DPFWPAALAD CAASFLAADT ACFRGVADID  60
LSGGSAASGK AAADGMDTAS FFAADDGHHH HLMPQEQQPV HSSSSLSSKR SLSVDSGGSW  120
STFFPLDDAS LAAAGGLFST PSPSHAAAPA AFAAGEDEAL MRAMMAVISS ASPSSSESSS  180
PPLGQDYTTA APAAVVQPRP ASGGNATSHV TVRSSSLAVG PERTASLTSA AAGGWQQQED  240
AKACSNNSSQ VYHMMSERKR REKLNDSFHT LSSLLPPCSK KDKTTVLINA ASFLKTLEAQ  300
VSELEEKNTK LESQGPYQQG GAGGAAGEPD GDGDGGVRHR GPGAAPPGVP PVDERGERAV  360
RRRRHLLAAG AAQGPRQHQA ADHGRRLLGR GAVPRGDDEG RARGDLVSLL VLLRRPGSAR  420
GRGLLGRSRG RARKPPPPRF LPPQVGCEAT GSAMAMRACS LRSALGSIYR QSCMVGL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261ERKRRE
2257262RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG339800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0544161e-108BT054416.1 Zea mays full-length cDNA clone ZM_BFc0045O17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819658.11e-126putative transcription factor bHLH041
TrEMBLA0A3L6SLC61e-140A0A3L6SLC6_PANMI; Uncharacterized protein
STRINGPavir.Ea01566.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-15bHLH family protein