PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG328700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 284aa    MW: 30959.5 Da    PI: 6.5872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG328700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09120167455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Pavir.5KG328700.1.p 120 SHSLAERVRRERISERMRVLQALVPGC----DKVTGKALILDEIINYVQSLQ 167
                          8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.46E-11114171No hitNo description
SuperFamilySSF474592.62E-17114183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.656116166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16116181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-7120167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-10122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MANFSHLSQH MEHGLANASH AMPSFLFCHG AAAADSTSLE TSSGVLDTSP RGTASVDKKI  60
RKPREDSASL SSAQSKDSNS KESTKKKGGK RERSSKEVDE EEEPKGYIHV RARRGQATDS  120
HSLAERVRRE RISERMRVLQ ALVPGCDKVT GKALILDEII NYVQSLQNQV EFLSMRIASL  180
SPVLYGFGMD SDAFGDHTQK MEGMLNHEVL AMPASVMNRA PSQAIMDTNT STSSPSYDEV  240
HGDGGTGISF PQDNGSYMVQ TVGEPRQELF NQVAFSNHMC SFQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.35630.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG328700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803717.10.0transcription factor bHLH137-like
TrEMBLA0A2S3H1M20.0A0A2S3H1M2_9POAL; Uncharacterized protein
TrEMBLA0A2T7EUH40.0A0A2T7EUH4_9POAL; Uncharacterized protein
STRINGPavir.J05063.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-37bHLH family protein