PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG318700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 330aa    MW: 37225 Da    PI: 10.2146
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG318700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-16114205185
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                          f k+ltpsdv+k++rl +p+kfae++       +++  ++  lt+ed + g  W ++++ + +s +yvltkGW  F k++       + F
  Pavir.5KG318700.1.p 114 FSKILTPSDVGKLNRLLVPRKFAEKYfpqisktKSDR-NDPILTFEDsSIGLIWHFRFSLWCSSTTYVLTKGWPTFIKDKSSTMVTLCPF 202
                          88**************************998863333.4458999997779*****************************9877777777 PP

                          EE- CS
                   B3  83 kld 85 
                          +++
  Pavir.5KG318700.1.p 203 YRS 205
                          754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-25103208IPR015300DNA-binding pseudobarrel domain
CDDcd100175.16E-15112193No hitNo description
SuperFamilySSF1019362.88E-19113223IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-6114229IPR003340B3 DNA binding domain
PROSITE profilePS5086310.221114223IPR003340B3 DNA binding domain
PfamPF023624.2E-14114205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MLMYYLIRSL LGASPDLSQP QSRHYLSHTS YSSRSMAFLG TWISREMGKQ KEKVPLCENP  60
FHMVNPFSSH LYVSPWTTMS APIFPLGLSN SHGGLGVCGA SKRGREVIEM EFLFSKILTP  120
SDVGKLNRLL VPRKFAEKYF PQISKTKSDR NDPILTFEDS SIGLIWHFRF SLWCSSTTYV  180
LTKGWPTFIK DKSSTMVTLC PFYRSVSKST GTNRFFIHIK PHVDIYSMPH HNTVPMFTPS  240
GLLIDERVRE GLGFGSGNRF EPTWKPLSFG FGGLKQSMNL MPQPNMSPMS FGNSMGKFGK  300
RLRLFGVNID IPPFANGDDF RNEWSNGVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-241072171108B3 domain-containing transcription factor NGA1
5os9_B3e-241072171108B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG318700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7F6E11e-175A0A2T7F6E1_9POAL; Uncharacterized protein
STRINGPavir.J25385.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16167813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-32B3 family protein