PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG312700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 26891.8 Da PI: 6.2459 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.8 | 8.5e-16 | 98 | 145 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GVr ++ +g+++AeIrd + k +r++lg+f+++e Aa a+++a+ + +g Pavir.5KG312700.1.p 98 GVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDSPEAAALAYDQAAFSVRG 145 9*****.**********32..2.24**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.364 | 95 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-20 | 96 | 155 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.5E-7 | 96 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-29 | 98 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-27 | 98 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-12 | 98 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.02E-16 | 98 | 154 | No hit | No description |
PRINTS | PR00367 | 3.5E-7 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MEQYQYASYM YNSSSYPDHA SGCAGGAGVT GAAADAGADD MQRLLNALML DMAAESESFS 60 DDMEAASSDS SSSACLSAAN DSGEKKSSAL GRPATLIGVR KRPWGKFAAE IRDSTRKGAR 120 VWLGTFDSPE AAALAYDQAA FSVRGAAAVL NFPVERVQDS LRALALSASS ASAAAAAAAG 180 SPVLALKSRH SIRKRSPNKN KKPPPHQHQH QRPQQQAAAA APPPQPAYPG SVVELEDLGA 240 DYLDELLRVS SELDHW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-24 | 98 | 155 | 17 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.25229 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG312700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034174 | 5e-69 | BT034174.1 Zea mays full-length cDNA clone ZM_BFc0032N13 mRNA, complete cds. | |||
GenBank | JX469950 | 5e-69 | JX469950.1 Zea mays subsp. mays clone UT3211 AP2-EREBP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802925.1 | 5e-93 | ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | A0A3L6QN38 | 1e-100 | A0A3L6QN38_PANMI; AP2-EREBP-type transcription factor | ||||
STRING | Pavir.J37124.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-33 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG312700.1.p |