PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG297900.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 239aa MW: 25818.3 Da PI: 4.5038

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG297900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40.4	6.3e-13	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+s+a elf+ +l r++ + ++ +tl+ ++++v+r fdfl+++v + Pavir.5KG297900.2.p 1 MQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVNK 69 899*************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	7.1E-12	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.05E-18	1	71	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.9E-18	1	68	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MQADEDVGKI ALAVPVLVSR ALELFLQDLI DRTYEITLQS GAKTLNSFHL KQCVKRYSSF 60 DFLTEVVNKV PDLGGADSCG DERGLPRRRK SNGSDPENDE SRSSKMAIRS ANISPRGRGR 120 GRGRGRGRPP TKRKEVGYVQ FEDESSMFAE QGEPLPGDET VPESNHGNEN INQSAQPPVE 180 APPPAAAPGA SKVEEANTDH QSDWPMPDAA TGNIGVGPSG FGHLTVQVDE DEDYDNED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-15	1	54	21	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	89	PRRRK
2	117	126	RGRGRGRGRG
3	117	127	RGRGRGRGRGR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.14063	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG297900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004979427.1	1e-144	dr1-associated corepressor
TrEMBL	A0A3L6PL15	1e-171	A0A3L6PL15_PANMI; Glutamic acid-rich protein
STRING	Pavir.Ea01995.1.p	1e-175	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-40	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Pavir.5KG297900.2.p