PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG273100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 248aa MW: 26868.2 Da PI: 4.923 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 46 | 89 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr T++E+ l+v++++q+G++ W++Iar ++ gRt++++k++w++ Pavir.5KG273100.2.p 46 RGRITADEERLIVQLHAQWGSR-WSRIARSLP-GRTDNEIKNFWRT 89 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-10 | 26 | 53 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-19 | 26 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.31 | 27 | 40 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 22.723 | 41 | 95 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-13 | 45 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-14 | 46 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.03E-11 | 50 | 89 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-18 | 54 | 91 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MRRRGAGGGD EEGPLDGGGG RAAGLRRTGK SCRLRWVNYL HPDLRRGRIT ADEERLIVQL 60 HAQWGSRWSR IARSLPGRTD NEIKNFWRTR TRKKALEERQ HSSGSNKTAA SPLSSMTTAS 120 CCPGSPNSGA DTQSSSAAPS GDDSAIREGS GGDDAELEEA STATAAASQH EEPQEYCCTV 180 DQLWTEIAAA DAAASYVLDG WGSGHCYYSA AAEPPPMPSS PVWEYSSDYS LWRIDDEEYY 240 REMLDAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-17 | 27 | 95 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-16 | 27 | 95 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-16 | 27 | 95 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-16 | 27 | 95 | 60 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 8e-17 | 27 | 95 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 8e-17 | 27 | 95 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.44792 | 0.0 | callus| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG273100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728360 | 7e-93 | KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806457.1 | 1e-119 | LOW QUALITY PROTEIN: transcription factor MYB59-like | ||||
TrEMBL | A0A2T7E7A0 | 1e-119 | A0A2T7E7A0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J36591.1.p | 1e-162 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.2 | 7e-36 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG273100.2.p |