PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG273100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 287aa    MW: 31739 Da    PI: 5.6983
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG273100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.6e-163279148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lv+ v+++G ++W+  a+  g++Rt+k+c++rw +yl
  Pavir.5KG273100.1.p 32 KGPWTEEEDAQLVRFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL 79
                         79********************************************97 PP
2Myb_DNA-binding51.42.4e-1685128146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rgr T++E+ l+v++++q+G++ W++Iar ++ gRt++++k++w++
  Pavir.5KG273100.1.p  85 RGRITADEERLIVQLHAQWGSR-WSRIARSLP-GRTDNEIKNFWRT 128
                          899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.2052783IPR017930Myb domain
SuperFamilySSF466893.11E-2830126IPR009057Homeodomain-like
SMARTSM007171.7E-153181IPR001005SANT/Myb domain
PfamPF002494.2E-153279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-213386IPR009057Homeodomain-like
CDDcd001676.88E-123479No hitNo description
PROSITE profilePS5129418.07284134IPR017930Myb domain
SMARTSM007171.1E-1384132IPR001005SANT/Myb domain
PfamPF002498.3E-1485128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2287133IPR009057Homeodomain-like
CDDcd001671.84E-1089128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MFMFGRNKKL DGQHQQQITG CGGAAPAAAM RKGPWTEEED AQLVRFVRLF GERRWDFLAK  60
VSGLRRTGKS CRLRWVNYLH PDLRRGRITA DEERLIVQLH AQWGSRWSRI ARSLPGRTDN  120
EIKNFWRTRT RKKALEERQH SSGSNKTAAS PLSSMTTASC CPGSPNSGAD TQSSSAAPSG  180
DDSAIREGSG GDDAELEEAS TATAAASQHE EPQEYCCTVD QLWTEIAAAD AAASYVLDGW  240
GSGHCYYSAA AEPPPMPSSP VWEYSSDYSL WRIDDEEYYR EMLDAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-27321344105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-273213458159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-273213458159MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-27321344105C-Myb DNA-Binding Domain
1msf_C1e-27321344105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.447920.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG273100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283601e-143KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680579.11e-131LOW QUALITY PROTEIN: transcription factor MYB59
TrEMBLA0A2S3H7D91e-153A0A2S3H7D9_9POAL; Uncharacterized protein
STRINGPavir.J36591.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.36e-58myb domain protein 59