PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG257700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 315aa MW: 33418.4 Da PI: 6.4191 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.7 | 2e-29 | 4 | 109 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal...peeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+ll+a+ ++ r+++++sl+yeA+ r+ +PvyG+vg++++ Pavir.5KG257700.1.p 4 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAApagADHLRRAVFRSLLYEACGRIVNPVYGSVGLLWS 93 6****************************************************95555677***************************** PP DUF260 83 lqqqleqlkaelallk 98 +q+q +q+++e++l + Pavir.5KG257700.1.p 94 GQWQACQAAVEAVLKG 109 **********998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.039 | 3 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.1E-24 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDACT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAAPAG 60 ADHLRRAVFR SLLYEACGRI VNPVYGSVGL LWSGQWQACQ AAVEAVLKGD PVVQVDAASD 120 APPPPLGSRA PGAAAYDIRH VAKDPDAAAT ADLLRVARGG RRSRFKRASS STSSKPHLKA 180 RASNNKRASP PSPPLRQQQE QEELEPEPMV VEHDKEDSAG SHDHHGQGSM DTDVEAGSHV 240 SQAEAEAEPQ SHAAPASSQV LEEDQEEEDV GLELTLGLQP AAEAGEGAFS PLRPERARCR 300 ASSAACGWRL ELPA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG257700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954764 | 1e-158 | EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ728404 | 1e-158 | KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817459.1 | 1e-143 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9M886 | 3e-71 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2S3HUY3 | 1e-142 | A0A2S3HUY3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea01295.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-59 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG257700.1.p |