PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG257700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 315aa    MW: 33418.4 Da    PI: 6.4191
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG257700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.72e-294109198
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal...peeeredamsslvyeAearardPvyGavgvilk 82 
                          +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a+    ++ r+++++sl+yeA+ r+ +PvyG+vg++++
  Pavir.5KG257700.1.p   4 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAApagADHLRRAVFRSLLYEACGRIVNPVYGSVGLLWS 93 
                          6****************************************************95555677***************************** PP

               DUF260  83 lqqqleqlkaelallk 98 
                          +q+q +q+++e++l +
  Pavir.5KG257700.1.p  94 GQWQACQAAVEAVLKG 109
                          **********998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.0393112IPR004883Lateral organ boundaries, LOB
PfamPF031959.1E-244105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDACT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAAPAG  60
ADHLRRAVFR SLLYEACGRI VNPVYGSVGL LWSGQWQACQ AAVEAVLKGD PVVQVDAASD  120
APPPPLGSRA PGAAAYDIRH VAKDPDAAAT ADLLRVARGG RRSRFKRASS STSSKPHLKA  180
RASNNKRASP PSPPLRQQQE QEELEPEPMV VEHDKEDSAG SHDHHGQGSM DTDVEAGSHV  240
SQAEAEAEPQ SHAAPASSQV LEEDQEEEDV GLELTLGLQP AAEAGEGAFS PLRPERARCR  300
ASSAACGWRL ELPA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG257700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547641e-158EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284041e-158KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817459.11e-143LOB domain-containing protein 40-like
SwissprotQ9M8863e-71LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2S3HUY31e-142A0A2S3HUY3_9POAL; Uncharacterized protein
STRINGPavir.Ea01295.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-59LOB domain-containing protein 41