PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG255700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 129aa MW: 14016.4 Da PI: 11.8518 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.1 | 8.6e-05 | 59 | 108 | 11 | 55 |
HHHHHHHHHHHHHHCTSCC.C.........TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPk.as......kapskKlsKaeiLekAveYIksLq 55 +R++ i+ ++e Lr+l+P a+ + ++++l+ e L +A YI Lq Pavir.5KG255700.1.p 59 KRVAAIRRKMEALRRLVPAaAPcggeerRVDDGRLE--ELLLHAAGYILRLQ 108 79*****************55598888877888888..88999999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-5 | 51 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-4 | 59 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MAAHASCDVA AGAATPTGAA SRRVGLRRPS RTTLKKKARK LMRKAGGGKR PRPSLSRTKR 60 VAAIRRKMEA LRRLVPAAAP CGGEERRVDD GRLEELLLHA AGYILRLQMQ VRVMQVMVHA 120 LNDDDPED* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 52 | KRPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG255700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819435.1 | 3e-47 | uncharacterized protein LOC112895669 | ||||
TrEMBL | A0A3L6SPJ6 | 7e-51 | A0A3L6SPJ6_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J31342.1.p | 4e-85 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9111 | 21 | 26 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG255700.1.p |