PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG217700.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 421aa MW: 45293 Da PI: 6.7228

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG217700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.7e-16	368	414	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq Pavir.5KG217700.3.p 368 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 414 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.14E-17	361	418	No hit	No description
SuperFamily	SSF47459	4.32E-19	362	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.981	364	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-13	368	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-19	368	418	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-17	370	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MSDGNDFAEL LWENGQAVVH GRRKQPPQTS FPPFTCGAAS SSRAQEKQPG GDPVALLKTG 60 GVFGAGGLAP SLHDFSSGLD ATRDNGDLDD TVPWIHYPII EEDAAEPALA DSYSPDFFSE 120 LYAAAAAATN LGSLPPPVQH TTNNRSNPVT TTGSEPEPSK ESHRFQIPGP STRPEPQAEF 180 AATKQPRLGG GGEGLMNFSL FSRPAAMARA SLQNAQRPPQ TGTDKASNVT TSTRVESTVL 240 QSASGPRTAP VFTEQRTAWS QQPKEVRFSC TAAPTAGNLQ QEMPRDRLGS ITLQKKVETR 300 KAPEAAVATS SVCSGNGAGT GNDESWRQHK RKSQAECSAS QDDDLEDESG GMRRSGSRGT 360 KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA SMLDEAIEYL KTLQLQVQVH 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MSDGNDFAEL LWENGQAVVH GRRKQPPQTS FPPFTCGAAS SSRAQEKQPG GDPVALLKTG  60
GVFGAGGLAP SLHDFSSGLD ATRDNGDLDD TVPWIHYPII EEDAAEPALA DSYSPDFFSE  120
LYAAAAAATN LGSLPPPVQH TTNNRSNPVT TTGSEPEPSK ESHRFQIPGP STRPEPQAEF  180
AATKQPRLGG GGEGLMNFSL FSRPAAMARA SLQNAQRPPQ TGTDKASNVT TSTRVESTVL  240
QSASGPRTAP VFTEQRTAWS QQPKEVRFSC TAAPTAGNLQ QEMPRDRLGS ITLQKKVETR  300
KAPEAAVATS SVCSGNGAGT GNDESWRQHK RKSQAECSAS QDDDLEDESG GMRRSGSRGT  360
KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA SMLDEAIEYL KTLQLQVQVH  420
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	377	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269\|PubMed:17485859}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG217700.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269\|PubMed:17485859}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817917.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
Swissprot	Q0JNI9	1e-160	PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBL	A0A3L6R267	0.0	A0A3L6R267_PANMI; Transcription factor APG-like isoform X1
STRING	Pavir.Ea01048.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	6e-37	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Pavir.5KG217700.3.p

Publications ? help Back to Top
Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]