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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.5KG215000.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
bHLH |
| Protein Properties |
Length: 367aa MW: 39685.9 Da PI: 6.8883 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.5KG215000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 23.4 | 1e-07 | 172 | 214 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+ E++RR r+ +++ L l+P++ +K + a++ A+eYI++L
Pavir.5KG215000.1.p 172 KKEKQRRLRLTEKYTALMLLIPNR-----TKDDRATVISDAIEYIQEL 214
57*********************9.....9****************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MYHPQCELLM AHESRDLDAG QPHLHASAGV AAIPTELSFH LLHSLDAAAA ISSVTPQPTI 60
DYFFGAAADS HQPAVQYEPL PPTHQQHTMN MLRDYCNGVG HYAAAAEPYL RGARTGALVF 120
GATDDESAAA YMPAGPFESS PPPRPTGGRK RSRALMSGGG FHGGPGNGGV EKKEKQRRLR 180
LTEKYTALML LIPNRTKDDR ATVISDAIEY IQELGRTVEE LTLLVGKKRR RMELQGDVVD 240
AAPAVAVPAA GEAESSEGEV APPPPPAAQQ RQPIRSTYIQ RRSKDTSVDV RIVEEDVNIK 300
LTKRRRDGCL AAASRALDDL RLDLVHLSGG KIGDCHIYMF NTKIHPSSPV FASAVASRLM 360
EVVDEY*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In anthers, expressed from the meiosis stage to mitosis, with maximum levels at stages 7 and 8, when meiosis initiates, and when endothecium and the middle layer become condensed, respectively. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in anthers; strong expression in the middle layer and tapetum, and weak expression in the endothecium. {ECO:0000269|PubMed:24755456}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}. |
