PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG172400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 583aa    MW: 63574 Da    PI: 4.818
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG172400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1244.9e-39201260261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grr++k++
  Pavir.5KG172400.1.p 201 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRRSKNA 260
                          7899****************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-31198258IPR003851Zinc finger, Dof-type
PfamPF027011.1E-31203259IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.882205259IPR003851Zinc finger, Dof-type
PROSITE patternPS013610207243IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MSDQDPGIKL FGRVIPLAPE PALGTTDHDQ PPEELLPRAL EEEEAAAAAD EDQHIEEEDK  60
EDSEMKVDMP QEKANEMKVD TPQEKGDEMK IDTPQVKGNE MKVDMPQEEK GTEMKFDASQ  120
KEHDGEMKVD AQQEKKDEQM NVGASPMTVN IQPGTLPTSD HNKADLGQVN STEDKAASDP  180
KGEIEKTSNE ESGQDKTLKK PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCQRYWT  240
AGGTMRNVPV GAGRRRSKNA SLHYRQLLMA PDCMLGSRVD MSKSVLPEAL VSPPSASIQP  300
TSRNEKVLKF GPEVPLCESM ASALNIDEQN VNNSGSAPRG ENREDNSCAS SVTSYNGLPE  360
NMVHVDKNGA PVYCNGVASL PQYYLGTPFM YPWSVGWNNL PVMVPGKNMP ESASASASES  420
CSTSSAPWMT SPMMPASRLP GPAFPYPLVP PLWGCLSGWP ATTWNIPWIR TNGCVSPSSS  480
SNSSCSGNGS PTLGKHSRDS NPLKDEKKEK SLWVPKTLRI DDPDEAAKSS IWATLGIKPG  540
DPGSFKPFQS KVESKGQKSD TAQVLQANPA ALSRSQSFQE SS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.10970.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG172400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2995670.0KF299567.1 Miscanthus sinensis clone Msin_Wk_14 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815271.10.0cyclic dof factor 2-like
TrEMBLA0A2T7DP350.0A0A2T7DP35_9POAL; Uncharacterized protein
STRINGPavir.Eb01078.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.24e-45cycling DOF factor 2