PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG166900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 473aa MW: 49553.1 Da PI: 7.2575 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.9 | 5.5e-11 | 60 | 86 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C +GdrC+++H++ Pavir.5KG166900.1.p 60 PGEADCGYYLRTGACGFGDRCRYNHPR 86 57899********************96 PP | |||||||
2 | zf-CCCH | 36.1 | 1.1e-11 | 110 | 135 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++++tGtCk+G++Ck++H++ Pavir.5KG166900.1.p 110 GQPICEYYFKTGTCKFGSNCKYHHPK 135 789*********************96 PP | |||||||
3 | zf-CCCH | 38.4 | 2.1e-12 | 155 | 180 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ Pavir.5KG166900.1.p 155 GEKECSYYMKTGQCKFGTTCKFHHPE 180 7899********************96 PP | |||||||
4 | zf-CCCH | 37.6 | 3.8e-12 | 308 | 334 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ Pavir.5KG166900.1.p 308 PGQPECQYYMRTGDCKFGGTCKYNHPR 334 5789*********************96 PP | |||||||
5 | zf-CCCH | 32 | 2.1e-10 | 357 | 380 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C ++a++G+C+yG Ck+ H++ Pavir.5KG166900.1.p 357 QPCAYYAQNGYCRYGVACKYDHPM 380 69********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.9E-6 | 59 | 86 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.92 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-9 | 61 | 86 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.11E-5 | 63 | 87 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 65 | 86 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.817 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-6 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 110 | 135 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.18E-6 | 111 | 137 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 113 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-6 | 153 | 180 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.371 | 153 | 181 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 155 | 180 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-6 | 156 | 180 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 159 | 179 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 307 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 307 | 334 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 309 | 334 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 311 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-6 | 353 | 380 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 353 | 381 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-5 | 354 | 382 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-8 | 357 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-5 | 357 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MEPPHAEEAA AAGGGGGEGG RASPGTGLEG PMLRLGLDGG GDGEGGEREA EADARLPERP 60 GEADCGYYLR TGACGFGDRC RYNHPRDRGG TEFGGGAKNG AASDFPERQG QPICEYYFKT 120 GTCKFGSNCK YHHPKQDGSV QSVILNNGGF PLRPGEKECS YYMKTGQCKF GTTCKFHHPE 180 FGGIPVTPGI YPPLQSASVP SPHTYAPLAN WQMGRSPVVP GSYIPGSYTP MMLSSGMVPL 240 QGWSPYPASV NSVASGGAQQ TVQAGPLYGI GHHGSSATIA YGSPYMPYSS STGQSSNNHQ 300 EHGFPERPGQ PECQYYMRTG DCKFGGTCKY NHPRDWSAAK SNYVFSPLCL PLRPGAQPCA 360 YYAQNGYCRY GVACKYDHPM GALGYSSSAL PLSDMPIAPY PLGFSVATLA PSSSSPEYIS 420 TKDPSINQVA SPVAAPEPVG AVLPKGVFPP DTIMRTQTST TGVGSSSPGG GR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.857 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG166900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968830 | 0.0 | EU968830.1 Zea mays clone 324384 zinc finger CCCH type domain-containing protein ZFN-like 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967811.1 | 0.0 | zinc finger CCCH domain-containing protein 6 | ||||
Swissprot | Q5NAW2 | 0.0 | C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6 | ||||
TrEMBL | A0A3L6QXY7 | 0.0 | A0A3L6QXY7_PANMI; Zinc finger CCCH domain-containing protein 6-like | ||||
STRING | Pavir.Ea00916.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2761 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-121 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG166900.1.p |
Publications ? help Back to Top | |||
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