PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG166800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 454aa    MW: 48638.9 Da    PI: 8.1275
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG166800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.4e-114470127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C +++rtG C yG+rC+++H++
  Pavir.5KG166800.1.p 44 PGEADCAYYLRTGACGYGERCRYNHPR 70
                         57899********************96 PP
2zf-CCCH39.97.1e-1394120127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++lC ++a++GtCk+G++CkF H++
  Pavir.5KG166800.1.p  94 PGQPLCEYYAKNGTCKFGSNCKFDHPR 120
                          589**********************96 PP
3zf-CCCH37.15.2e-12139164227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tG+Ck+G++CkF+H++
  Pavir.5KG166800.1.p 139 GEKECSYYMKTGHCKFGGTCKFHHPE 164
                          6789********************96 PP
4zf-CCCH37.63.6e-12292318127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C ++++tG Ck+G+ Ck++H++
  Pavir.5KG166800.1.p 292 PGQPECEHYMKTGACKFGAACKYHHPQ 318
                          5789*********************97 PP
5zf-CCCH331e-10340364327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            +C ++a+ G+Ck+G++CkF H++
  Pavir.5KG166800.1.p 340 SQPCTYYAQHGFCKFGPTCKFDHPM 364
                          679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0424371IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-64370IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-84570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-64772IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-54970IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.91593121IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-793120IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-1095120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-698120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136137165IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5137164IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9139164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5143166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53291319IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-6291318IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-10293318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5295318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178337365IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6337364IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8339364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6339368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5341362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEPYAAAKEG GGGGDASTGL EEPMRRLGLG GDGEAGDAKL PERPGEADCA YYLRTGACGY  60
GERCRYNHPR DRDRATPVNG VGRTAGAVEY PERPGQPLCE YYAKNGTCKF GSNCKFDHPR  120
EGGFAPVALN SSGFPLRQGE KECSYYMKTG HCKFGGTCKF HHPELRILSE TPTIYPPVQP  180
SPVSSPHPYP HLANWQMGRP PVVPGSFLPG SYPPMMLPPT LMPMQGWNPY ISPMNQVAPA  240
GGQQTVQTGP PYGLSHQGPT SAVTYGSHYA QLYSSAGTSS TNIQEYALPE RPGQPECEHY  300
MKTGACKFGA ACKYHHPQYF SGPKSNCALS PLGLPLRPGS QPCTYYAQHG FCKFGPTCKF  360
DHPMGTLNYS PSVSSLTDVP VTPYTLSFPV TPMAPYLSSS DLRPQYTLTK EHSANPPAVP  420
GTTYGPVGTI SKVYAPHTLI RPLNAAAAGM QAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.7491e-111callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG166800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815660.10.0uncharacterized protein LOC112892755
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A2T7DPA20.0A0A2T7DPA2_9POAL; Uncharacterized protein
STRINGPavir.Ea00915.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.34e-95C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]