PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG160700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 366aa MW: 41122.9 Da PI: 7.6732 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 136.7 | 1.5e-42 | 20 | 172 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....................kvkaeekewyfFskrdkkyat 70 lppGfrF P+dee++++yL +kv+++++++ +++ evd +k+ k+k ++kewyfF k+d+ky++ Pavir.5KG160700.1.p 20 LPPGFRFYPSDEEIITFYLMPKVHQRNFTC-TAMGEVDFNKTRAMGTVWyalfapmhpihkhlvymvhdKAKLGDKEWYFFYKKDRKYPS 108 79*************************999.778888888887655431345667778888888888777777999************** PP NAM 71 gkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrle 129 g+r+nrat +gyWkatgkdke+++ +l+g+kktLvfykgrap gektdWvmhe+rle Pavir.5KG160700.1.p 109 GTRANRATGEGYWKATGKDKEIYRDvvglvLPQLIGMKKTLVFYKGRAPGGEKTDWVMHEFRLE 172 ************************8776665566***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-48 | 15 | 207 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.017 | 20 | 207 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-25 | 21 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MGDRQEQPKE ISSGGGSLEL PPGFRFYPSD EEIITFYLMP KVHQRNFTCT AMGEVDFNKT 60 RAMGTVWYAL FAPMHPIHKH LVYMVHDKAK LGDKEWYFFY KKDRKYPSGT RANRATGEGY 120 WKATGKDKEI YRDVVGLVLP QLIGMKKTLV FYKGRAPGGE KTDWVMHEFR LEGSNRLSCR 180 TSSSTSSTTM KSSNSKDDWV VCRVLYKATG SKRTTTLPQY NLDTTSHGTN ERSTPVAMPL 240 QFPMLSDFTM NPQVSYYSTA SASSSLVSPM MPPMPDMGTM DLQMNNTLFR NPMAIVPPMS 300 YHQMGMGVAS VDSFMAAPNN GPLLMVSQNE NENNPDHTNP IELSSMVSAV PEYLATIDMD 360 SIWEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-42 | 18 | 213 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-42 | 18 | 213 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-42 | 18 | 213 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-42 | 18 | 213 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-42 | 17 | 213 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-42 | 17 | 213 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-42 | 17 | 213 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-42 | 17 | 213 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-42 | 17 | 213 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-42 | 17 | 213 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-42 | 17 | 213 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-42 | 17 | 213 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-42 | 18 | 213 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-42 | 18 | 213 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG160700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682349.1 | 1e-137 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | A0A3L6R0D6 | 0.0 | A0A3L6R0D6_PANMI; Protein CUP-SHAPED COTYLEDON 1-like | ||||
STRING | Pavir.Eb00976.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 2e-56 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG160700.1.p |