PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG151000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 375aa    MW: 40097.1 Da    PI: 7.6009
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG151000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.56.4e-50301731128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yL+k++++ ++++  +i+evdiyk++PwdLp+k+  +e ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk
  Pavir.5KG151000.1.p  30 LPPGFRFHPTDEELILHYLRKRAAAAPCPA-PIIAEVDIYKFDPWDLPAKAIFGEAEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDK 118
                          79***************************9.88***************77777999********************************** PP

                  NAM  91 evlsk..kgel.................vglkktLvfykgrapkgektdWvmheyrl 128
                          +++ +  +                    +g+kk Lvfykgr pkg kt+W+mheyrl
  Pavir.5KG151000.1.p 119 PITLSssS--SgagaaaapdpssdsramIGVKKALVFYKGRPPKGLKTSWIMHEYRL 173
                          ***98550..345556667777777777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6026207IPR003441NAC domain
PROSITE profilePS5100557.8230207IPR003441NAC domain
PfamPF023652.8E-2631173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MTIDLGLAPA PAPSSSGGRG GGMASPCAAL PPGFRFHPTD EELILHYLRK RAAAAPCPAP  60
IIAEVDIYKF DPWDLPAKAI FGEAEWYFFS PRDRKYPNGV RPNRAAGSGY WKATGTDKPI  120
TLSSSSSGAG AAAAPDPSSD SRAMIGVKKA LVFYKGRPPK GLKTSWIMHE YRLAEALAAA  180
NTYRPMRFKN SSSMRLDDWV LCRIYKKTTP QLYCSPPHDD ETSMDGGLDL GRQHDGSSAS  240
VGDIVAAYAP AGGLPRPASI SDYLVDFNYS PVSELLESMP APETAAQLGT MDAAGRLFYA  300
ANHGEAAASS SSTAQQQSSH KRRFMEDYSN SDLNLLHASS SKRVMSDQLA SSMASNLAFS  360
SVFEPGQTSL PDRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-683020915170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269|PubMed:22278768}.
UniprotTISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:22278768}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG151000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554201e-137EU955420.1 Zea mays clone 1531701 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816084.10.0NAC transcription factor 29-like
SwissprotQ8H4S45e-83NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBLA0A2S3HX030.0A0A2S3HX03_9POAL; Uncharacterized protein
STRINGPavir.Ea00837.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-73NAC domain containing protein 47
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]