PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG150300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 719aa    MW: 82336.6 Da    PI: 7.2478
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG150300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.72.5e-1528118190
                 FAR1   1 kfYneYAkevGFsvrkskskks.........krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                          ++Yn Y+ e+GF +r  k++ s         + +    +++f+Cs+ gk++ + k+        ++++tgCka+l+v++++d+ w v + 
  Pavir.5KG150300.1.p  28 EYYNLYSWECGFGIRWGKKRWSenrrknngpEAKPYQLSQEFYCSCRGKPDGNVKT--------SSSKTGCKAMLRVHRTSDDGWIVVEH 109
                          69*************9887766666544444333456789999****999998877........999*********************** PP

                 FAR1  82 eleHnHela 90 
                           +eHnH+l+
  Pavir.5KG150300.1.p 110 ISEHNHPLS 118
                          *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1228118IPR004330FAR1 DNA binding domain
PfamPF105517.3E-18240322IPR018289MULE transposase domain
PROSITE profilePS5096610.014497533IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-4508535IPR006564Zinc finger, PMZ-type
PfamPF044346.5E-5510531IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MKFAKHTSGY VINPSVGTEF DSCDEAYEYY NLYSWECGFG IRWGKKRWSE NRRKNNGPEA  60
KPYQLSQEFY CSCRGKPDGN VKTSSSKTGC KAMLRVHRTS DDGWIVVEHI SEHNHPLSEI  120
CGEKKHWPSH HHLDKYTKDL VRMLRENNIG ITKLYTILGN FFGSMQNVPA TKRCLKTLCQ  180
KINREQAEDD IKKTMDLIRE LRKSDPGFLF SVDTDEDGRI KSLMWTNSRS RMQYEHFGDV  240
VSFDTTFKTN LYDMPFGLFV GVNNHFQTVL LGGVLMTDEK IDSFKWVFRD FASLMGGREP  300
RTILTEEWQN TVHRWCKWHV LKRVKECLGT KYTSIKEFRD KFHLMLNEML TIEEFEQSWA  360
ALLKEEKWVK SYFKGVFCAR MTSTQRSESA NHMLKNILSP GCTLRLFLDQ YMKMQYIRDE  420
DENYEERRNK LNVKKMTVGG PLVVHAHKVY TLKVFALFCD LKEESEFYRA IEVVQGKHYV  480
AEHYDLNRVQ RWCKGKYEVE VVERGGKYIC ECGLFEHFGL PCSHILRVMI STGVQQIPGD  540
MILQRWTKQA RHLLPEELAQ YKKDNPALMA QTYKHSSLML KALHLVEMGD SNAESHTIAM  600
QILDNGLESL HEVAKKKDGL GLGHPQAEVQ ASVQGRIGDS MGCSNDPPSP NLQDSAAGVG  660
DGAEGLGDSS WCTNPSVKLQ LDDSDAASEA AEYIVDVCSS EEEEGDATSS ATKKRRVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG150300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J08534.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-61FAR1-related sequence 5