PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG149800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 333aa    MW: 35266.6 Da    PI: 8.3674
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG149800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.6e-052212591255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Pavir.5KG149800.2.p 221 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 259
                          7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.655209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.04E-6219263No hitNo description
SuperFamilySSF474594.58E-11219270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-9223266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MMQELGFQWS NCSFADTSSV PMNGQQDGHS KIKEEEPLNP RSSCAGTAAI SYYHDIDGGG  60
GGLPAMAAAD LDGTVLPSVN ISRPQQLKAW PAAPPPLPGD AFEILASSRL CKTLLLSQAS  120
SVLLHNGMPL LRSENVPYGP PAAHPQGPSG DNYNQQMGAA SLANGGGGRH WSAEHDAAPA  180
CQKAARPAVV PSQSQSPQAP SLKKPRVESH SSTVVPSFKV RKEKLGDRIA ALQQLVSPFG  240
KTDTASVLME AIGYIKFLQD QVETLSGPYL KSSRNRKPSR TTQRGASNAN GGEQEETRLD  300
LRSRGLCLVP LSCTSYVTNE NGVWAPPNFR GN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG149800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9502575e-54EU950257.1 Zea mays clone 484112 mRNA sequence.
GenBankEU9503525e-54EU950352.1 Zea mays clone 489974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816405.10.0transcription factor bHLH110
TrEMBLA0A2S3HWX80.0A0A2S3HWX8_9POAL; Uncharacterized protein
STRINGPavir.Ea00834.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-47bHLH family protein