PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG149800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 424aa    MW: 45192.4 Da    PI: 7.0137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG149800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.8e-053123501255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Pavir.5KG149800.1.p 312 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 350
                          7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.655300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-11310361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-5310354No hitNo description
Gene3DG3DSA:4.10.280.101.0E-8314357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MMASSSSSSN LSDHLVQDDL PWPSSFLPFA PAPHSALIGG SHQWSQQTQS LNCADHHYYH  60
SDELEVLSVQ GHNHSHHAAS PLLPHQLSSL LMMQELGFQW SNCSFADTSS VPMNGQQDGH  120
SKIKEEEPLN PRSSCAGTAA ISYYHDIDGG GGGLPAMAAA DLDGTVLPSV NISRPQQLKA  180
WPAAPPPLPG DAFEILASSR LCKTLLLSQA SSVLLHNGMP LLRSENVPYG PPAAHPQGPS  240
GDNYNQQMGA ASLANGGGGR HWSAEHDAAP ACQKAARPAV VPSQSQSPQA PSLKKPRVES  300
HSSTVVPSFK VRKEKLGDRI AALQQLVSPF GKTDTASVLM EAIGYIKFLQ DQVETLSGPY  360
LKSSRNRKPS RTTQRGASNA NGGEQEETRL DLRSRGLCLV PLSCTSYVTN ENGVWAPPNF  420
RGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG149800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9502577e-54EU950257.1 Zea mays clone 484112 mRNA sequence.
GenBankEU9503527e-54EU950352.1 Zea mays clone 489974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816405.10.0transcription factor bHLH110
TrEMBLA0A2S3HWX80.0A0A2S3HWX8_9POAL; Uncharacterized protein
STRINGPavir.Ea00834.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.16e-47bHLH family protein