PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG148700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 392aa    MW: 43484.6 Da    PI: 5.4018
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG148700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.53.9e-51211531129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +ppGfrF+P+dee++++yL++kv+++++++  ++ evd+ ++ePw+Lp k++ +ek+wyfF++ d+ky++g+r nratk+g+Wkatgkdk
  Pavir.5KG148700.1.p  21 MPPGFRFNPSDEEIITFYLTPKVQQRSFTC-AAMGEVDLKRTEPWELPGKANIGEKDWYFFCQMDRKYQKGSRMNRATKDGFWKATGKDK 109
                          79**************************99.78***************99999************************************* PP

                  NAM  91 evlskkgel.....vglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ ++ +     +g+kktLvfy+grap+g+kt+W+mheyrle
  Pavir.5KG148700.1.p 110 EIYRVTTGValpelIGMKKTLVFYTGRAPRGQKTSWIMHEYRLE 153
                          ***98443346666****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-5612189IPR003441NAC domain
PROSITE profilePS5100554.47121189IPR003441NAC domain
PfamPF023651.1E-2722152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGDQHQQQEP QVMHVSGSLE MPPGFRFNPS DEEIITFYLT PKVQQRSFTC AAMGEVDLKR  60
TEPWELPGKA NIGEKDWYFF CQMDRKYQKG SRMNRATKDG FWKATGKDKE IYRVTTGVAL  120
PELIGMKKTL VFYTGRAPRG QKTSWIMHEY RLEGDDKLPY PAANSISTAT MKSSSASKEE  180
WVICRVTHKI TGTKKAPTSP PYNNTMDNIG IDHSSIHMPL PPEFPLLSDF AMDQSSIHMP  240
LPPEFQLLPD FTMDQSSIHM PLPPEFPMLP NFTMDPAGIY NSTTDVSSLL AADVIPPSIA  300
GMGIDTPQMN GASLGNSMAV APQIPFYHRS NIGTIDASGF MAAPQGMPSL MVSQEGTGMS  360
LDQTNAVEIS SMVSIVPEST TTRDMDFLWR Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-451919515171NO APICAL MERISTEM PROTEIN
1ut4_B9e-451919515171NO APICAL MERISTEM PROTEIN
1ut7_A9e-451919515171NO APICAL MERISTEM PROTEIN
1ut7_B9e-451919515171NO APICAL MERISTEM PROTEIN
3swm_A1e-441919518174NAC domain-containing protein 19
3swm_B1e-441919518174NAC domain-containing protein 19
3swm_C1e-441919518174NAC domain-containing protein 19
3swm_D1e-441919518174NAC domain-containing protein 19
3swp_A1e-441919518174NAC domain-containing protein 19
3swp_B1e-441919518174NAC domain-containing protein 19
3swp_C1e-441919518174NAC domain-containing protein 19
3swp_D1e-441919518174NAC domain-containing protein 19
4dul_A9e-451919515171NAC domain-containing protein 19
4dul_B9e-451919515171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG148700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815672.10.0NAC domain-containing protein 87-like
TrEMBLA0A2T7DPV80.0A0A2T7DPV8_9POAL; Uncharacterized protein
STRINGPavir.Ea00746.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.22e-68NAC domain containing protein 80