PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.5KG147000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 192aa MW: 20369.7 Da PI: 7.8407 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.1 | 8.5e-10 | 38 | 86 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 +e+Er+RR++++s +L +l+Pk +s K ++ + L +A YIk+L Pavir.5KG147000.2.p 38 KEIERKRRQHMKSLCVKLASLIPKeH---YSSKdtMTQQDSLDEAATYIKKL 86 79**********************55...44444599*************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-10 | 26 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.467 | 32 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.26E-7 | 37 | 90 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.1E-12 | 37 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-7 | 38 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-6 | 38 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MDVKKSSSSS HTAAEGRRSS ASDSSGRGGA SAAGVERKEI ERKRRQHMKS LCVKLASLIP 60 KEHYSSKDTM TQQDSLDEAA TYIKKLKERV DELHQKRSSA QLLAGMRGGG GGASTSATTT 120 RSSGVGSEEA DEEAMAAPPV VEVRHHHDGS SLDVVLVSSV ARPFKLHEVV TVLEEEGAEI 180 INANFSVVGR I* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 40 | 45 | ERKRRQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.5KG147000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727751 | 4e-41 | KJ727751.1 Zea mays clone pUT5692 bHLH transcription factor (bHLH83) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818152.1 | 8e-89 | transcription factor bHLH162-like isoform X4 | ||||
TrEMBL | A0A2S3HX08 | 6e-88 | A0A2S3HX08_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2S3HX77 | 5e-88 | A0A2S3HX77_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8INA1 | 6e-88 | A0A2T8INA1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00786.1.p | 1e-133 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-11 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.5KG147000.2.p |