PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG146900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 26779.1 Da PI: 8.7122 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.1 | 2.1e-10 | 61 | 108 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 +e+Er+RR++++s ++L +l+Pk + +s+ ++ L +A YIk+L Pavir.5KG146900.1.p 61 KEIERKRRQQMKSLCATLASLIPKeD---YSRDaMTQLGSLDEAAAYIKKL 108 79**********************77...88888***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.956 | 55 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-12 | 60 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-11 | 60 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.92E-5 | 60 | 112 | No hit | No description |
SMART | SM00353 | 3.7E-7 | 61 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-7 | 61 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MPWHRSRARE AETVRLRGFG RDLSMEMGAG KKSRSSSDTA TAGKRSSMRS NSSGTTAVER 60 KEIERKRRQQ MKSLCATLAS LIPKEDYSRD AMTQLGSLDE AAAYIKKLKE RVDELQQKRS 120 SAQLMAADTS GGGGGGGGSV ASTSAAATAA SGGARSEEDA AEEAAEAPVV EVVHYNDGSS 180 LDVVLISSVE RPFKLHEVVT VLEEEGAEII NANLSVVGRK IFHTIHCRAF SPRIGIEVSR 240 VSERLRELV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 68 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG146900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818432.1 | 1e-107 | transcription factor bHLH162-like | ||||
TrEMBL | A0A2S3HX22 | 1e-106 | A0A2S3HX22_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J08114.1.p | 1e-162 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 7e-12 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG146900.1.p |