PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG146800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Nin-like
Protein Properties Length: 187aa    MW: 21149.9 Da    PI: 4.9911
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG146800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK53.93.4e-17138176240
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyG 40 
                          ++ +++e +s+yFs+pik+AA+eL+v+lTvLKr+CR +G
  Pavir.5KG146800.1.p 138 KQGLTFELVSRYFSMPIKQAARELDVGLTVLKRRCRALG 176
                          6789*********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151911.809123186IPR003035RWP-RK domain
PfamPF020422.8E-12141176IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGCPYIEWKE LHSRWKSTAE KPSQALVEPV GVQCHGEPSV LNDSAMEELR FNEKGYHYYH  60
GLKLHEDKGY FQFQDFSADY LLGEETHFCA IACSESSFSQ EELGCLSEVD FASFWALVEE  120
EDARRKSEEG PRSEPGKKQG LTFELVSRYF SMPIKQAARE LDVGLTVLKR RCRALGAAAI  180
VWIVSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG146800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822796.12e-67protein RKD1
TrEMBLA0A3L6RT057e-71A0A3L6RT05_PANMI; Protein RKD3-like
STRINGPavir.Aa00708.1.p3e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45903365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.11e-10RWP-RK domain-containing protein