PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG143400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 304aa    MW: 31424.1 Da    PI: 6.9087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG143400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278e-09221262955
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  Pavir.5KG143400.1.p 221 AKVRRERIAEKLKVLQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 262
                          589*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.322212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-12213270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-12214272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.70E-11214266No hitNo description
SMARTSM003532.5E-10218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-6222262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAQASKRSAM QQPQLRPVTM YGDGEPSSMS LELFGYHGGV VVDGDEGEGE GSAAAALSLQ  60
LAFDDDSCFK HGASAAGGDY YGSWAGYGGS GASSSSSSSV LSFEQAGSGG GHHHHHLGDD  120
GCALWMDVAA AGMVEQHPPP QHGSACRFGL VSPGSSADDD AGGLHIQGMG SVQPPAKTTN  180
KRARPDGEVQ AAAAKKQCGG GRKSKAKAAP APTKDPQSVA AKVRRERIAE KLKVLQDLVP  240
NGTKVDLVTM LEKAITYVKF LQLQVKVLAA DEFWPAQGGK APDLSQVKDA LDAILSSQKY  300
PHK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG143400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819067.11e-158transcription factor bHLH83-like
TrEMBLA0A2S3HX401e-157A0A2S3HX40_9POAL; Uncharacterized protein
STRINGPavir.Eb00817.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-44ROOT HAIR DEFECTIVE6