PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG131900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HB-other | ||||||||
Protein Properties | Length: 214aa MW: 23334 Da PI: 11.0071 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.6 | 1e-08 | 170 | 202 | 9 | 41 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLte 41 ++qle+Le+ + +++yp++++r+eL+ +lgLt Pavir.5KG131900.1.p 170 PYQLEVLERTYTEDSYPNETKRAELSVQLGLTY 202 58*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-6 | 170 | 203 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.4E-6 | 170 | 202 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-7 | 170 | 203 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.65E-5 | 170 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGATKAPGRR RRRGWGAPAC RRPPRTLAVG AVEPVRLDPG GRSALRRQDP LRAARAHGRY 60 PDAADDGGGD ERGRVAAQRQ DDGAHRPPSA PPPGAPPDAR APERRGRVPE GQGRHRSDGH 120 LPAHRREGLQ LGPDGEEQVG ARAQAAGVGP FLEEERERAR KIAREIKGFP YQLEVLERTY 180 TEDSYPNETK RAELSVQLGL TYHRHGALWP LPP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.15268 | 8e-71 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG131900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037701 | 5e-87 | BT037701.1 Zea mays full-length cDNA clone ZM_BFb0188M04 mRNA, complete cds. | |||
GenBank | BT083934 | 5e-87 | BT083934.2 Zea mays full-length cDNA clone ZM_BFb0056B03 mRNA, complete cds. | |||
GenBank | BT087233 | 5e-87 | BT087233.1 Zea mays full-length cDNA clone ZM_BFb0009G24 mRNA, complete cds. | |||
GenBank | BT087915 | 5e-87 | BT087915.1 Zea mays full-length cDNA clone ZM_BFb0307H15 mRNA, complete cds. | |||
GenBank | DQ245327 | 5e-87 | DQ245327.1 Zea mays clone 14512 mRNA sequence. | |||
GenBank | EU962950 | 5e-87 | EU962950.1 Zea mays clone 246814 hypothetical protein mRNA, complete cds. |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG131900.1.p |