PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG129400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 812aa MW: 86688.7 Da PI: 5.4895 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.3 | 4.8e-22 | 104 | 159 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++lgL+ rqVk+WFqNrR+++k Pavir.5KG129400.1.p 104 KKRYHRHTPQQIQELEALFKECPHPDEKQRGELSRRLGLDPRQVKFWFQNRRTQMK 159 678899***********************************************999 PP | |||||||
2 | START | 185.4 | 3.1e-58 | 321 | 553 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCS.CHHHHHHHHHCCCGGCT-TT-S. CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvd.mvlallveellddkeqWdetla. 77 ela +a++elvk+a+ +ep+W s e +n +e+ +f + + + +ea+r+sg+v+ ++++ lve+l+d + +W+ ++ Pavir.5KG129400.1.p 321 ELAISAMDELVKLAQIDEPLWLPSLngspnkETLNFEEYAHTFLPCIGvkpmgYVSEASRESGLVIiDDSVALVETLMDER-RWSDMFSs 409 57889********************66666666666677777766666***************997245679*********.99999999 PP ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..-TTS--....-TTSEE-EESSEEE CS START 78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..seqkppe...sssvvRaellpSgi 152 ka+++e ++sg gal lm+aelq+lsplvp R+++f+R+++ql +g w++vdvS+d ++++++ ++ +R+++lpSg+ Pavir.5KG129400.1.p 410 miaKATVIEEVTSGiagsrnGALLLMKAELQVLSPLVPiREVTFLRFCKQLAEGAWAVVDVSIDglVRDQNSAttsNAANIRCRRLPSGC 499 999************************************************************85423333335568999********** PP EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++++ng +kvtwveh++++++++h+l+r+l++sgla+ga++w+a lqrqce+ Pavir.5KG129400.1.p 500 VMQDTPNGFCKVTWVEHTEYDEASVHQLYRPLIRSGLAFGARRWLAMLQRQCEC 553 ****************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.52E-22 | 85 | 161 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 89 | 161 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.285 | 101 | 161 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-21 | 102 | 165 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.90E-20 | 103 | 161 | No hit | No description |
Pfam | PF00046 | 1.5E-19 | 104 | 159 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 136 | 159 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 46.46 | 312 | 556 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.04E-29 | 315 | 553 | No hit | No description |
CDD | cd08875 | 7.11E-114 | 316 | 552 | No hit | No description |
SMART | SM00234 | 1.7E-45 | 321 | 553 | IPR002913 | START domain |
Pfam | PF01852 | 6.8E-51 | 322 | 553 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.15E-21 | 573 | 779 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 812 aa Download sequence Send to blast |
MSFGSLFDGG AGGGGGSGGM QFPFSAGFSS SPGLSLGLDN SAGGGMGGGR ALPGGPGAGG 60 GSGAAARDAD AENDSRSGSD HLDAMSGGGE DEDDAEPGNP RKRKKRYHRH TPQQIQELEA 120 LFKECPHPDE KQRGELSRRL GLDPRQVKFW FQNRRTQMKT QLERHENALL KQENDKLRAE 180 NMTIREAMRS PMCGSCGSPA MLGEVSLEEQ HLCIENARLK DELSRVYALA TKFLGKPMSM 240 LAGPLMQPHL SSLPMPSSSL ELAVGGFRGL GSIPSATMPG SMGEFAGGVS SPLGTVITPA 300 RATGSAPSAM VRIDDRSMLL ELAISAMDEL VKLAQIDEPL WLPSLNGSPN KETLNFEEYA 360 HTFLPCIGVK PMGYVSEASR ESGLVIIDDS VALVETLMDE RRWSDMFSSM IAKATVIEEV 420 TSGIAGSRNG ALLLMKAELQ VLSPLVPIRE VTFLRFCKQL AEGAWAVVDV SIDGLVRDQN 480 SATTSNAANI RCRRLPSGCV MQDTPNGFCK VTWVEHTEYD EASVHQLYRP LIRSGLAFGA 540 RRWLAMLQRQ CECLAILMSP DTVSANDSSV ITQEGKRSML KLARRMTENF CAGVSASSAR 600 EWSKLDGATG SIGENVRVMA RKSVDEPGEP PGVVLSAATS VWVPVAPEKL FNFLRDEQLR 660 AEWDILSNGG PMQEMANIAK GQEHGNSVSL LRASAMSANQ SSMLILQETR TDASGSMVVY 720 APVDIPAMQL VMNGGDSTYV ALLPSGFAIL PDGPSATTGH KTGGSLLTVA FQILVNSQPT 780 AKLTVESVET VNNLITCTIK KIKTALQCDA T* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 105 | PRKRKKR |
2 | 100 | 104 | RKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.16640 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00418 | DAP | Transfer from AT3G61150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG129400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816451.1 | 0.0 | homeobox-leucine zipper protein ROC5-like | ||||
Swissprot | Q6EPF0 | 0.0 | ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5 | ||||
TrEMBL | A0A2T7DQ95 | 0.0 | A0A2T7DQ95_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00587.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG129400.1.p |
Publications ? help Back to Top | |||
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